Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | LT85_RS03155 | Genome accession | NZ_CP009962 |
| Coordinates | 713547..714701 (-) | Length | 384 a.a. |
| NCBI ID | WP_038485159.1 | Uniprot ID | A0A0A1FAE1 |
| Organism | Collimonas arenae strain Cal35 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 708547..719701
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LT85_RS03125 (LT85_0626) | - | 708798..709142 (-) | 345 | WP_038485144.1 | DUF1840 domain-containing protein | - |
| LT85_RS03130 (LT85_0627) | - | 709264..709809 (-) | 546 | WP_253273655.1 | hypothetical protein | - |
| LT85_RS03135 (LT85_0628) | - | 709847..710806 (-) | 960 | WP_038485147.1 | DMT family transporter | - |
| LT85_RS03140 (LT85_0629) | - | 710896..711732 (-) | 837 | WP_038485150.1 | AraC family transcriptional regulator | - |
| LT85_RS03145 (LT85_0630) | ftsX | 711748..712674 (-) | 927 | WP_038485153.1 | permease-like cell division protein FtsX | - |
| LT85_RS03150 (LT85_0631) | - | 712671..713375 (-) | 705 | WP_038485156.1 | cell division ATP-binding protein FtsE | - |
| LT85_RS03155 (LT85_0632) | pilA | 713547..714701 (-) | 1155 | WP_038485159.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| LT85_RS03160 (LT85_0634) | rsmD | 714928..715575 (+) | 648 | WP_038485163.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| LT85_RS03165 (LT85_0635) | coaD | 715622..716110 (+) | 489 | WP_038485166.1 | pantetheine-phosphate adenylyltransferase | - |
| LT85_RS03170 (LT85_0636) | - | 716217..716495 (+) | 279 | WP_038485169.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| LT85_RS03175 (LT85_0637) | - | 716599..717534 (+) | 936 | WP_038485172.1 | 4-hydroxyproline epimerase | - |
| LT85_RS03180 (LT85_0638) | - | 717531..718676 (+) | 1146 | WP_052134605.1 | FAD-binding oxidoreductase | - |
| LT85_RS03185 (LT85_0639) | - | 718669..718932 (+) | 264 | WP_038485176.1 | (2Fe-2S)-binding protein | - |
Sequence
Protein
Download Length: 384 a.a. Molecular weight: 40261.67 Da Isoelectric Point: 6.1738
>NTDB_id=133187 LT85_RS03155 WP_038485159.1 713547..714701(-) (pilA) [Collimonas arenae strain Cal35]
MFSFFKKKPKPEVAPVPEAPAAELPQTAAVNIPADATPAVVPATATATAPAIAPIIEVPAPIAIATPAVVAEAQAEIVSA
PVAAEQKRSWLSRLKTGLSKTSSNLSTLFVGAKIDEDLYEELESALLVSDAGVDATHFLLNALKKKVKEEKLTEAAQVKA
ALRTLLIDLLTPLQKPLVLEEHQPLVIMIAGVNGAGKTTTIGKLAKHLQAHKQSVLLAAGDTFRAAAREQLTIWGERNNV
TVIAQESGDPAAVAFDAVHSAQARGTNVVMVDTAGRLPTQLHLMDELKKIKRVIGKGMATAPHEILLVIDGNTGQNALAQ
VKAFDDALGLTGLVITKLDGTAKGGVLAAIATTRAIPVYFIGVGEQIEDLQPFNAADFVDALLN
MFSFFKKKPKPEVAPVPEAPAAELPQTAAVNIPADATPAVVPATATATAPAIAPIIEVPAPIAIATPAVVAEAQAEIVSA
PVAAEQKRSWLSRLKTGLSKTSSNLSTLFVGAKIDEDLYEELESALLVSDAGVDATHFLLNALKKKVKEEKLTEAAQVKA
ALRTLLIDLLTPLQKPLVLEEHQPLVIMIAGVNGAGKTTTIGKLAKHLQAHKQSVLLAAGDTFRAAAREQLTIWGERNNV
TVIAQESGDPAAVAFDAVHSAQARGTNVVMVDTAGRLPTQLHLMDELKKIKRVIGKGMATAPHEILLVIDGNTGQNALAQ
VKAFDDALGLTGLVITKLDGTAKGGVLAAIATTRAIPVYFIGVGEQIEDLQPFNAADFVDALLN
Nucleotide
Download Length: 1155 bp
>NTDB_id=133187 LT85_RS03155 WP_038485159.1 713547..714701(-) (pilA) [Collimonas arenae strain Cal35]
ATGTTTAGTTTCTTCAAGAAAAAACCCAAACCCGAAGTTGCGCCAGTGCCGGAAGCGCCGGCAGCAGAATTACCGCAGAC
GGCGGCAGTCAACATTCCAGCCGACGCAACGCCTGCCGTTGTCCCCGCTACTGCTACTGCTACTGCTCCTGCTATCGCGC
CGATTATAGAAGTACCCGCGCCAATCGCTATTGCGACACCGGCCGTCGTCGCTGAGGCGCAAGCCGAGATTGTCTCGGCT
CCCGTGGCTGCGGAGCAAAAACGGTCCTGGCTGTCACGCCTGAAAACCGGGTTGTCCAAGACCTCATCCAACCTGAGCAC
CTTGTTTGTCGGCGCCAAGATCGATGAAGACCTGTATGAGGAACTGGAATCGGCGCTGCTGGTTTCCGACGCCGGCGTCG
ACGCCACTCATTTCCTGTTGAACGCCCTGAAAAAGAAGGTCAAGGAAGAAAAACTGACCGAGGCGGCCCAGGTCAAGGCC
GCGCTGCGCACTTTGCTGATCGATTTGCTGACGCCTTTGCAAAAGCCGCTGGTGCTGGAAGAGCATCAGCCGCTGGTGAT
CATGATCGCAGGCGTCAACGGCGCCGGCAAAACCACGACCATCGGCAAACTGGCCAAGCATCTGCAGGCGCACAAGCAAT
CGGTATTGCTGGCAGCAGGCGATACGTTCCGTGCCGCCGCACGCGAACAACTGACGATCTGGGGCGAACGCAACAACGTC
ACGGTAATCGCCCAGGAATCCGGCGACCCTGCCGCAGTAGCTTTCGACGCCGTCCATTCGGCGCAGGCGCGCGGCACCAA
TGTGGTGATGGTGGATACCGCCGGCCGCCTGCCGACACAGCTGCATCTGATGGATGAGCTGAAGAAAATCAAACGCGTGA
TCGGCAAAGGCATGGCCACTGCCCCGCACGAGATTTTGCTGGTCATCGACGGCAACACTGGCCAGAACGCGCTGGCCCAG
GTCAAGGCTTTCGACGATGCGCTGGGACTGACCGGGCTGGTGATCACTAAACTGGACGGCACCGCCAAGGGCGGCGTGCT
GGCGGCAATCGCCACCACGCGCGCAATCCCGGTCTATTTCATCGGCGTCGGCGAACAGATCGAAGACTTGCAGCCGTTTA
ATGCCGCCGATTTTGTGGATGCGCTACTTAATTAA
ATGTTTAGTTTCTTCAAGAAAAAACCCAAACCCGAAGTTGCGCCAGTGCCGGAAGCGCCGGCAGCAGAATTACCGCAGAC
GGCGGCAGTCAACATTCCAGCCGACGCAACGCCTGCCGTTGTCCCCGCTACTGCTACTGCTACTGCTCCTGCTATCGCGC
CGATTATAGAAGTACCCGCGCCAATCGCTATTGCGACACCGGCCGTCGTCGCTGAGGCGCAAGCCGAGATTGTCTCGGCT
CCCGTGGCTGCGGAGCAAAAACGGTCCTGGCTGTCACGCCTGAAAACCGGGTTGTCCAAGACCTCATCCAACCTGAGCAC
CTTGTTTGTCGGCGCCAAGATCGATGAAGACCTGTATGAGGAACTGGAATCGGCGCTGCTGGTTTCCGACGCCGGCGTCG
ACGCCACTCATTTCCTGTTGAACGCCCTGAAAAAGAAGGTCAAGGAAGAAAAACTGACCGAGGCGGCCCAGGTCAAGGCC
GCGCTGCGCACTTTGCTGATCGATTTGCTGACGCCTTTGCAAAAGCCGCTGGTGCTGGAAGAGCATCAGCCGCTGGTGAT
CATGATCGCAGGCGTCAACGGCGCCGGCAAAACCACGACCATCGGCAAACTGGCCAAGCATCTGCAGGCGCACAAGCAAT
CGGTATTGCTGGCAGCAGGCGATACGTTCCGTGCCGCCGCACGCGAACAACTGACGATCTGGGGCGAACGCAACAACGTC
ACGGTAATCGCCCAGGAATCCGGCGACCCTGCCGCAGTAGCTTTCGACGCCGTCCATTCGGCGCAGGCGCGCGGCACCAA
TGTGGTGATGGTGGATACCGCCGGCCGCCTGCCGACACAGCTGCATCTGATGGATGAGCTGAAGAAAATCAAACGCGTGA
TCGGCAAAGGCATGGCCACTGCCCCGCACGAGATTTTGCTGGTCATCGACGGCAACACTGGCCAGAACGCGCTGGCCCAG
GTCAAGGCTTTCGACGATGCGCTGGGACTGACCGGGCTGGTGATCACTAAACTGGACGGCACCGCCAAGGGCGGCGTGCT
GGCGGCAATCGCCACCACGCGCGCAATCCCGGTCTATTTCATCGGCGTCGGCGAACAGATCGAAGACTTGCAGCCGTTTA
ATGCCGCCGATTTTGTGGATGCGCTACTTAATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
50.839 |
100 |
0.552 |