Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AKN41_RS16185 Genome accession   NZ_CP012376
Coordinates   3304721..3305197 (+) Length   158 a.a.
NCBI ID   WP_001186727.1    Uniprot ID   -
Organism   Escherichia coli strain GE3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3299721..3310197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKN41_RS16160 (AKN41_3246) - 3302289..3302744 (+) 456 WP_042110819.1 IrmA family protein -
  AKN41_RS25135 - 3302887..3302976 (+) 90 WP_231228162.1 DUF905 family protein -
  AKN41_RS16175 (AKN41_3249) - 3303145..3303963 (+) 819 WP_001234639.1 DUF932 domain-containing protein -
  AKN41_RS16180 (AKN41_3251) - 3304226..3304705 (+) 480 WP_000706981.1 antirestriction protein -
  AKN41_RS16185 (AKN41_3252) radC 3304721..3305197 (+) 477 WP_001186727.1 RadC family protein Machinery gene
  AKN41_RS16190 (AKN41_3253) - 3305266..3305487 (+) 222 WP_000692326.1 DUF987 domain-containing protein -
  AKN41_RS16195 (AKN41_3255) - 3305650..3306018 (+) 369 WP_001285402.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AKN41_RS16200 (AKN41_3256) cbtA 3306108..3306482 (+) 375 WP_000854816.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  AKN41_RS16205 (AKN41_3257) - 3306479..3306970 (+) 492 WP_000976865.1 DUF5983 family protein -
  AKN41_RS16210 (AKN41_3258) - 3306990..3307187 (+) 198 WP_000772027.1 DUF957 domain-containing protein -
  AKN41_RS16215 (AKN41_3259) - 3307272..3308114 (+) 843 WP_001274564.1 DUF4942 domain-containing protein -
  AKN41_RS16220 (AKN41_3260) yghD 3308395..3308931 (-) 537 WP_000942795.1 GspM family type II secretion system protein YghD -
  AKN41_RS16225 (AKN41_3261) gspL 3308933..3310111 (-) 1179 WP_000094989.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17646.30 Da        Isoelectric Point: 7.2020

>NTDB_id=133124 AKN41_RS16185 WP_001186727.1 3304721..3305197(+) (radC) [Escherichia coli strain GE3]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=133124 AKN41_RS16185 WP_001186727.1 3304721..3305197(+) (radC) [Escherichia coli strain GE3]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACTCCCAGTAAGGCAGACCGCCTTATCACGGAACGCCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment