Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   OY17_RS02980 Genome accession   NZ_CP009938
Coordinates   595044..595334 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus sp. BH072 isolate honey     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 590044..600334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OY17_RS02940 (OY17_02940) darA 590062..590391 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  OY17_RS02945 (OY17_02945) - 590404..590844 (+) 441 WP_004264730.1 DUF327 family protein -
  OY17_RS02950 (OY17_02950) holB 590856..591845 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  OY17_RS02955 (OY17_02955) ricT 591848..592675 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  OY17_RS02960 (OY17_02960) yabA 592690..593049 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  OY17_RS02965 (OY17_02965) - 593110..593853 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  OY17_RS02970 (OY17_02970) - 593840..594139 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  OY17_RS02975 (OY17_02975) rsmI 594114..594995 (+) 882 WP_014416718.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  OY17_RS02980 (OY17_02980) abrB 595044..595334 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  OY17_RS02985 (OY17_02985) metG 595817..597808 (+) 1992 WP_014416719.1 methionine--tRNA ligase -
  OY17_RS02990 (OY17_02990) - 597885..598652 (+) 768 WP_032864028.1 TatD family hydrolase -
  OY17_RS02995 (OY17_02995) - 598787..600112 (+) 1326 WP_014720609.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=133119 OY17_RS02980 WP_169510469.1 595044..595334(-) (abrB) [Bacillus sp. BH072 isolate honey]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=133119 OY17_RS02980 WP_169510469.1 595044..595334(-) (abrB) [Bacillus sp. BH072 isolate honey]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment