Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   Csca_RS09360 Genome accession   NZ_CP009933
Coordinates   2122745..2124607 (-) Length   620 a.a.
NCBI ID   WP_029163458.1    Uniprot ID   A0A0E3K0K4
Organism   Clostridium scatologenes strain ATCC 25775     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2117745..2129607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Csca_RS09330 (CSCA_1958) - 2118133..2118603 (-) 471 WP_029163453.1 HAD hydrolase family protein -
  Csca_RS09335 (CSCA_1959) - 2118646..2119395 (-) 750 WP_029163454.1 phosphate ABC transporter ATP-binding protein -
  Csca_RS09340 (CSCA_1960) pstA 2119398..2120228 (-) 831 WP_029163455.1 phosphate ABC transporter permease PstA -
  Csca_RS09345 (CSCA_1961) pstC 2120242..2121111 (-) 870 WP_029163456.1 phosphate ABC transporter permease subunit PstC -
  Csca_RS09350 (CSCA_1962) - 2121171..2122085 (-) 915 WP_029163457.1 phosphate ABC transporter substrate-binding protein -
  Csca_RS09355 (CSCA_1963) - 2122333..2122491 (-) 159 WP_007061385.1 zinc-ribbon domain-containing protein -
  Csca_RS09360 (CSCA_1964) rcrQ 2122745..2124607 (-) 1863 WP_029163458.1 ABC transporter ATP-binding protein Regulator
  Csca_RS09365 (CSCA_1965) - 2124604..2126856 (-) 2253 WP_029163459.1 ABC transporter ATP-binding protein -
  Csca_RS09370 (CSCA_1966) - 2127109..2127552 (+) 444 WP_029163460.1 MarR family transcriptional regulator -
  Csca_RS09375 (CSCA_1967) - 2127769..2128917 (+) 1149 WP_029163461.1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain -

Sequence

Protein


Download         Length: 620 a.a.        Molecular weight: 69011.01 Da        Isoelectric Point: 7.3288

>NTDB_id=133070 Csca_RS09360 WP_029163458.1 2122745..2124607(-) (rcrQ) [Clostridium scatologenes strain ATCC 25775]
MSDRKIENKRQGGFGGGHMGGMGNGEKAKNFKSTMNKLLQYLKPYRLSIIIVIIFAIGSAAFSIIGPKILGKATTKLFEG
LVNKVMGVKGAAIDFSYIGYIAILLLALYVVSAVFSIIQGYIVSGVAQKVSYNFRKEIDEKINRMPLKYFDKRTHGEVLS
RITNDVDTVSQSLNQSMSQIITSVVTIIGVLIMMLSISWQMTLVALLILPVSMVLITGVIKKSQKYFKSQQEYLGHVNGQ
VEEIYSGHNIVKAFNREEEAVKNFEEVNDVLYSSAWKSQFLSGMMMPIMTFIGNIGYVAVSILGGWLAIKKTIEVGDILS
FVQYVRSFTQPISQVAQIANVLQSTAAAAERVFEFLEEEEEVKESENPVKLQEVKGEVTFKDVQFGYNPDKMIINNFGAH
IKPGQKVAIVGPTGAGKTTIVKLLMRFYDLNSGSILIDGHDIKDFTREDLRSMFGMVLQDTWLFNGEIMENIRYGKLDAL
DKDVVEAAKSAHVHHFVKTLPKGYNMELNEEASNVSQGQKQLLTIARALLKDPKILILDEATSSIDTRTEVLIQKAMENL
MKGRTSFIIAHRLSTIRDADLILVMNDGDIVEQGSHQELLEANGFYASLYNSQFENAYAS

Nucleotide


Download         Length: 1863 bp        

>NTDB_id=133070 Csca_RS09360 WP_029163458.1 2122745..2124607(-) (rcrQ) [Clostridium scatologenes strain ATCC 25775]
ATGAGTGATAGAAAAATAGAAAATAAGAGACAAGGTGGCTTTGGCGGTGGTCATATGGGAGGTATGGGAAATGGTGAAAA
GGCGAAGAATTTTAAATCCACCATGAATAAATTACTGCAATATTTAAAACCATATAGGTTATCGATAATTATTGTAATTA
TTTTTGCAATAGGTAGTGCAGCTTTTTCTATAATAGGTCCCAAAATTTTAGGTAAGGCAACAACCAAGCTTTTTGAAGGA
TTGGTAAATAAGGTAATGGGAGTAAAAGGTGCAGCCATTGACTTTAGCTATATAGGGTATATTGCAATTTTGCTTCTTGC
ATTATATGTTGTTAGTGCTGTGTTCTCAATTATACAAGGATATATAGTTTCAGGAGTGGCACAAAAGGTATCTTATAATT
TCAGAAAGGAAATTGATGAAAAGATTAATCGTATGCCGCTTAAGTACTTTGATAAGAGGACACATGGAGAAGTGCTGTCC
AGGATTACTAATGATGTAGATACTGTGAGTCAATCATTAAATCAAAGTATGTCACAAATAATAACATCAGTTGTTACAAT
AATAGGTGTATTAATTATGATGTTATCAATAAGTTGGCAAATGACATTAGTTGCGCTTTTAATACTGCCAGTATCAATGG
TTCTAATAACAGGGGTAATAAAAAAATCACAAAAGTATTTTAAATCTCAACAGGAATATTTAGGCCATGTTAATGGACAA
GTAGAAGAAATTTATAGTGGTCACAATATAGTAAAGGCCTTTAATAGAGAAGAGGAAGCGGTTAAAAATTTTGAAGAAGT
TAATGATGTACTTTATAGTTCAGCATGGAAATCTCAATTTTTATCTGGGATGATGATGCCAATTATGACTTTCATTGGTA
ATATAGGTTATGTAGCTGTATCTATTTTAGGTGGATGGCTTGCAATAAAGAAAACTATTGAAGTTGGAGATATTTTATCC
TTTGTTCAGTATGTTAGAAGTTTTACACAGCCAATATCTCAAGTAGCTCAAATAGCTAATGTACTTCAATCCACAGCAGC
TGCTGCAGAAAGGGTTTTTGAATTTTTAGAAGAGGAAGAAGAAGTAAAAGAATCAGAAAATCCAGTTAAGCTTCAAGAGG
TTAAAGGGGAAGTTACTTTTAAGGATGTTCAATTTGGATATAATCCTGATAAAATGATAATAAATAATTTTGGAGCTCAT
ATTAAACCTGGTCAAAAGGTAGCTATAGTAGGACCAACTGGAGCGGGAAAGACCACAATAGTTAAACTTTTAATGCGTTT
TTATGATTTAAATAGTGGATCTATATTAATCGATGGACATGATATAAAAGATTTTACTAGAGAAGATTTGCGTAGTATGT
TTGGTATGGTACTTCAAGATACTTGGCTATTTAATGGTGAAATAATGGAGAATATACGTTATGGTAAACTTGATGCTTTG
GATAAAGACGTTGTTGAAGCAGCTAAGTCAGCTCATGTTCACCATTTTGTAAAAACCTTGCCAAAGGGATATAACATGGA
ATTAAATGAAGAAGCAAGCAATGTATCTCAAGGGCAAAAGCAGCTATTAACCATTGCTCGTGCACTTTTAAAAGATCCTA
AAATATTAATACTTGATGAAGCTACAAGTTCTATTGATACTCGTACAGAGGTGCTTATTCAAAAGGCTATGGAAAACTTA
ATGAAAGGAAGAACAAGTTTTATTATTGCTCATAGATTATCAACAATACGTGATGCAGATTTGATACTTGTAATGAATGA
TGGAGATATTGTAGAACAAGGTAGTCATCAAGAATTATTAGAGGCAAATGGTTTTTATGCTTCACTTTACAATAGTCAAT
TTGAAAATGCTTATGCCTCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(49-331)

ABC transporter (ABC_tran)

(395-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E3K0K4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.551

94.839

0.498

Multiple sequence alignment