Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AEI11_RS05520 Genome accession   NZ_CP012250
Coordinates   1059873..1060367 (+) Length   164 a.a.
NCBI ID   WP_002860433.1    Uniprot ID   Q5HTR6
Organism   Campylobacter jejuni strain CJ516CC45     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1054873..1065367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI11_RS05505 (AEI11_05540) - 1056259..1057437 (-) 1179 WP_002877097.1 metal-dependent hydrolase -
  AEI11_RS05510 (AEI11_05545) gpsA 1057447..1058343 (-) 897 WP_075888380.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  AEI11_RS05515 (AEI11_05550) gatB 1058340..1059758 (-) 1419 WP_002868575.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  AEI11_RS05520 (AEI11_05555) luxS 1059873..1060367 (+) 495 WP_002860433.1 S-ribosylhomocysteine lyase Regulator
  AEI11_RS05525 (AEI11_05560) - 1060679..1061670 (+) 992 Protein_1087 isopenicillin N synthase family dioxygenase -
  AEI11_RS05530 (AEI11_05565) - 1061681..1062451 (+) 771 WP_002877094.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  AEI11_RS05535 (AEI11_05570) metE 1062463..1064727 (+) 2265 WP_002877092.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18271.22 Da        Isoelectric Point: 6.3290

>NTDB_id=133060 AEI11_RS05520 WP_002860433.1 1059873..1060367(+) (luxS) [Campylobacter jejuni strain CJ516CC45]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=133060 AEI11_RS05520 WP_002860433.1 1059873..1060367(+) (luxS) [Campylobacter jejuni strain CJ516CC45]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTGTTTGATTTGCGTTTTTGTATACCAAATAAAGACATTATGAGCGAAAAAGGTACAC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATCTTAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCAAAAGCTTGGGAAGAAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5HTR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707