Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OK18_RS08455 Genome accession   NZ_CP009928
Coordinates   1877695..1878804 (-) Length   369 a.a.
NCBI ID   WP_053327723.1    Uniprot ID   A0A0G3M0G2
Organism   Chryseobacterium gallinarum strain DSM 27622     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1872695..1883804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK18_RS08425 (OK18_08435) - 1873113..1873493 (-) 381 WP_053327720.1 group III truncated hemoglobin -
  OK18_RS08430 (OK18_08440) - 1873642..1874610 (+) 969 WP_053327721.1 ion channel -
  OK18_RS08435 (OK18_08445) - 1874614..1875102 (+) 489 WP_050021662.1 YkgJ family cysteine cluster protein -
  OK18_RS08440 (OK18_08450) - 1875302..1875616 (+) 315 WP_053327722.1 hypothetical protein -
  OK18_RS08445 (OK18_08455) - 1875567..1876016 (-) 450 WP_082129167.1 iron chaperone -
  OK18_RS08450 (OK18_08460) gdhA 1876146..1877504 (-) 1359 WP_050021659.1 NADP-specific glutamate dehydrogenase -
  OK18_RS08455 (OK18_08465) dprA 1877695..1878804 (-) 1110 WP_053327723.1 DNA-processing protein DprA Machinery gene
  OK18_RS08460 (OK18_08470) - 1878838..1879605 (-) 768 WP_050021657.1 rhomboid family intramembrane serine protease -
  OK18_RS08465 (OK18_08475) - 1879850..1880779 (+) 930 WP_053327724.1 DUF3078 domain-containing protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 41661.67 Da        Isoelectric Point: 8.5287

>NTDB_id=133031 OK18_RS08455 WP_053327723.1 1877695..1878804(-) (dprA) [Chryseobacterium gallinarum strain DSM 27622]
MISEEYFYAIALRECSQIGDINFYKLVRTFGSAQEAWKRAKKEYRKIEGLGQKTVADIGNKEHLTFAEKELKYCEKNNIR
ITIRHLNELPALLNECADAPAILYQKGNYENSTPKISIVGTRNMTAYGRQFIEDFFEAAQSSRFISVSGLALGIDKEVHE
KSIQYRKPTIAVLAHGFQFLYPAKNRKLSERILQEGGCLITEFNSSRKPDRENFIQRNRIVAGISPSTIVVETGFGGGSV
STAAFANDYNREVFALPGKITDPYSQGCNQLIFHNKAIAISTIKDLVNMLGFNHPKEKTGELFPYYETSAQLTENQHIIY
KIIKENPQITLDDLSQEAAVSSYKILPIILELELLGKVKSFSGRQFMAI

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=133031 OK18_RS08455 WP_053327723.1 1877695..1878804(-) (dprA) [Chryseobacterium gallinarum strain DSM 27622]
ATGATTTCCGAAGAATACTTTTATGCCATCGCCCTCCGCGAATGCAGTCAAATTGGTGATATTAACTTTTATAAACTTGT
CCGGACCTTTGGAAGTGCCCAGGAAGCATGGAAAAGAGCAAAGAAAGAATACAGGAAAATAGAAGGGTTAGGCCAAAAGA
CAGTGGCAGATATTGGAAATAAGGAACATCTGACCTTTGCCGAAAAAGAGCTGAAGTATTGTGAAAAAAATAATATCCGG
ATTACGATACGACACCTTAATGAACTTCCGGCTCTTCTTAATGAATGTGCAGATGCCCCTGCCATACTTTATCAAAAAGG
AAATTATGAAAATTCAACACCCAAAATAAGTATTGTAGGAACCCGGAATATGACCGCCTATGGCAGGCAATTCATTGAAG
ATTTTTTTGAGGCCGCTCAATCTTCCCGGTTTATATCAGTAAGCGGTCTTGCTTTAGGTATTGATAAAGAGGTCCATGAA
AAATCCATACAATACCGGAAACCCACAATAGCAGTTCTCGCCCACGGTTTTCAGTTTTTATATCCTGCCAAAAACAGGAA
ATTGTCTGAACGGATCCTTCAGGAGGGAGGCTGCCTTATTACAGAATTCAATTCTTCCCGGAAACCCGACCGGGAAAACT
TTATCCAGAGAAACAGAATTGTTGCGGGAATTTCCCCTTCAACAATTGTAGTGGAAACCGGGTTCGGGGGAGGCTCCGTA
AGTACAGCTGCCTTTGCCAACGATTACAATCGTGAAGTTTTTGCCCTTCCCGGAAAAATTACCGACCCTTATAGCCAGGG
ATGCAATCAACTGATTTTCCATAACAAAGCGATTGCTATTTCTACGATTAAAGACCTTGTCAATATGCTTGGTTTCAATC
ATCCTAAAGAGAAAACCGGGGAACTGTTCCCCTATTATGAGACTTCAGCGCAGCTAACTGAAAATCAGCACATAATATAT
AAAATTATAAAAGAAAATCCCCAAATCACTTTAGATGATCTTTCACAGGAAGCAGCTGTTTCTTCGTACAAAATTTTACC
GATAATTTTAGAATTGGAGCTTTTAGGGAAAGTAAAATCATTTTCCGGGAGACAATTTATGGCAATTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G3M0G2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Riemerella anatipestifer ATCC 11845 = DSM 15868

52.861

99.458

0.526

Multiple sequence alignment