Detailed information NTG0132997

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: AEI09_RS01890
• Genome accession: NZ_CP012248
• Coordinates: 350003..352576 (-)
• Length: 857 a.a.
• NCBI ID: WP_022552248.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain CJ514CC45
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 345003..357576

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AEI09_RS01880 (AEI09_01900)	maf	347496..348047 (+)	552	WP_002866403.1	septum formation inhibitor Maf	-
AEI09_RS01885 (AEI09_01905)	pbpA	348044..349975 (+)	1932	WP_002857099.1	penicillin-binding protein 1A	-
AEI09_RS01890 (AEI09_01910)	clpC	350003..352576 (-)	2574	WP_022552248.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
AEI09_RS01895 (AEI09_01915)	-	352688..352978 (-)	291	WP_002855280.1	metal-sensing transcriptional repressor	-
AEI09_RS01900 (AEI09_01920)	-	353096..354430 (+)	1335	WP_002856815.1	S41 family peptidase	-
AEI09_RS01905 (AEI09_01925)	purC	354432..355142 (+)	711	WP_002854922.1	phosphoribosylaminoimidazolesuccinocarboxamide synthase	-
AEI09_RS01910 (AEI09_01930)	purS	355151..355396 (+)	246	WP_002866405.1	phosphoribosylformylglycinamidine synthase subunit PurS	-
AEI09_RS01915 (AEI09_01935)	purQ	355398..356070 (+)	673	Protein_380	phosphoribosylformylglycinamidine synthase I	-
AEI09_RS01920 (AEI09_01940)	-	356042..357238 (+)	1197	WP_002877649.1	SH3 domain-containing protein	-

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 95471.56 Da
• Isoelectric Point: 5.3329

>NTDB_id=132997 AEI09_RS01890 WP_022552248.1 350003..352576(-) (clpC) [Campylobacter jejuni strain CJ514CC45]
MANIQNFLTDNMLSNLESAASLAIHSKNNEVAPLHLLWALSVDSTSILNQILNKLNISKEALELEIKSRISKLATSSNVN
RENIRFSNELINSLENAKGLMSANGDSYLSVDTWLVSESQKSPTKEILAQFLDLREFQKELESLRAGRKIDSKTSDETLD
SLNKFGIDLTLKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVEALAQRIIKKDVPKSLQNKKVIA
LDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILFIDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYR
KYFEKDAALQRRFQPVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYIADRFLPDKAIDLIDEAAAE
LKMQIESEPSSLRKVRKDIETLEVENEALKMENDEKNQKRLDEIAKELANLKEKQNALNSQFENEKSVFDGISAKKKEID
LLKNEASLAKARGEFQKAAELEYGKIPSLEKEVEILEDKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQ
KFLEVEKHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKFLFDDEKAMIRFDMSEF
MEKHSVSRLLGAPPGYIGHEEGGELTEAVRRKPYSVLLFDEVEKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILT
SNIASSAIMNLSGKEQEDVVKNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIKASLSENAAL
LIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADELHENDSIIIDAKDDEIIIKKA

Nucleotide

• Length: 2574 bp

>NTDB_id=132997 AEI09_RS01890 WP_022552248.1 350003..352576(-) (clpC) [Campylobacter jejuni strain CJ514CC45]
ATGGCAAATATACAAAATTTTCTAACTGATAATATGCTTTCAAACCTTGAAAGCGCAGCATCTTTAGCTATACATTCTAA
AAATAATGAAGTTGCACCTTTACATCTTTTATGGGCTTTAAGCGTAGATAGTACAAGTATTTTAAATCAAATTTTAAATA
AATTAAATATTTCCAAAGAAGCCTTAGAACTTGAAATTAAAAGCAGAATTTCAAAACTTGCAACGAGTTCAAATGTAAAC
CGTGAAAATATACGCTTTTCCAATGAACTTATAAATTCATTAGAAAATGCTAAAGGATTAATGAGTGCTAATGGAGATAG
TTATTTAAGTGTGGATACTTGGCTTGTAAGTGAAAGTCAAAAAAGTCCTACTAAAGAAATTTTGGCGCAATTTTTAGATT
TAAGAGAATTTCAAAAAGAGCTTGAAAGTCTAAGAGCGGGACGCAAAATCGATAGCAAAACAAGCGATGAAACCTTAGAC
AGCTTAAATAAATTTGGTATAGATTTAACCTTAAAAGCAAGCGAAGGTAAACTTGATCCTGTTATAGGCAGAGAAGAAGA
AATCGAACGTTTAATGCAAATTTTAATACGCAAAACCAAAAATAACCCTATACTTTTAGGTGAACCAGGCGTAGGAAAAA
CAGCTATAGTGGAAGCTTTAGCACAAAGAATTATTAAAAAAGATGTTCCAAAATCTTTGCAAAATAAAAAAGTTATCGCT
CTTGACATGAGTGCTTTAATTGCAGGTGCAAAATACAGAGGAGAATTTGAAGACAGATTAAAAGCTGTCGTTAATGAAGT
GATAAAAAGTGAAAATATCATTCTTTTTATCGATGAAATTCACACTATAGTAGGAGCTGGAGCGAGTGAAGGCAGTATGG
ATGCGGCAAATATTTTAAAACCTGCTCTTGCAAGAGGTGAACTCCATACTATAGGCGCAACTACTTTAAAAGAATATCGT
AAATATTTTGAAAAAGATGCAGCCTTGCAACGCCGTTTTCAACCTGTAAATGTAGGTGAGCCAAGCGTTAATGAGGCTTT
GGCTATGTTAAGGGGTATAAAAGAAAAGCTTGAAATTCATCATAATGTAACTATAAATGATAGCGCTTTAGTAGCTGCAG
CTAAACTTTCAAAGCGTTATATAGCGGATCGTTTTTTACCTGATAAGGCCATTGATTTAATCGATGAAGCTGCAGCTGAA
CTGAAAATGCAAATTGAAAGCGAACCAAGTTCTTTAAGAAAAGTACGCAAAGATATAGAAACTTTAGAAGTTGAAAATGA
AGCTTTAAAAATGGAAAATGACGAGAAAAATCAAAAAAGACTTGATGAAATCGCAAAAGAACTAGCCAATTTAAAAGAAA
AACAAAATGCCTTAAATTCACAGTTTGAAAATGAAAAAAGTGTTTTTGATGGCATAAGTGCTAAGAAAAAAGAAATTGAT
CTGCTTAAAAATGAAGCTTCTTTGGCTAAAGCTAGAGGTGAATTTCAAAAAGCAGCCGAGCTAGAGTATGGAAAAATTCC
AAGTCTTGAAAAAGAAGTAGAAATTTTAGAAGATAAATGGAAAAAAATGAGTGAAAATGGAGTTTTACTTAAAAATCAAG
TGGATGAGGATTTGGTTGCTGGAATTTTAAGCAAATGGACGGGTATTAGCGTGCAAAAAATGTTAACTTCTGAAAAACAA
AAATTCTTAGAAGTGGAAAAACATTTAAAAGAAAGTGTCATAGGACAAGATAAGGCCTTAAGTGCTTTAGCTAGAGCCAT
TAAACGCAACAAAGCAGGACTTAATGCGGACAATAAACCTATAGGAAGCTTTTTATTTTTAGGGCCAACAGGGGTAGGAA
AAACACAATCAGCTAAAGCTTTGGCAAAATTTTTATTTGACGATGAAAAAGCAATGATTCGCTTTGATATGAGTGAATTT
ATGGAAAAACATAGTGTTTCAAGACTCTTAGGCGCACCTCCAGGGTACATAGGACATGAAGAAGGTGGAGAGCTTACTGA
AGCTGTGCGAAGAAAACCTTATAGCGTGCTTTTGTTTGATGAAGTTGAAAAAGCACATAAAGATGTATTTAATGTGCTTT
TAGGGATTTTAGATGATGGTAGAGCAACCGATAGCAAAGGTGTAACAGTGGATTTTAAAAATACCATTATCATTTTAACT
TCTAATATTGCCTCAAGCGCTATTATGAATTTAAGCGGAAAAGAACAAGAAGATGTGGTAAAAAATGAGTTAAAAAATTT
CTTTAAACCTGAGTTTTTAAACCGCTTAGATGATATTATCACCTTTAATCCACTTGGAAAAGATGAAGCTTATGAAATAG
TTAAGCTTTTATTTAAAGATTTACAAATGAGCTTAGAAAACAAGGGGATAAAAGCGAGTTTAAGCGAAAATGCAGCCCTT
TTAATCGCTAAAGATGGTTTTGATCCTGATTTTGGTGCTAGACCTTTAAGAAGAGCTATTTATGATCTTATAGAAGATAA
ATTAAGCGATATGATACTTGCTGATGAACTTCATGAAAATGATAGCATTATCATTGATGCAAAAGATGATGAAATAATCA
TCAAAAAAGCTTAA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (204-316)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (765-844)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-145)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (19-70)

• AAA lid domain (AAA_lid_9) (342-444)

• AAA domain (Cdc48 subfamily) (AAA_2) (599-759)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	43.291	100	0.433
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.217	100	0.419