Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   SSAL8618_RS04060 Genome accession   NZ_CP009913
Coordinates   800155..800457 (+) Length   100 a.a.
NCBI ID   WP_004182757.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NCTC 8618     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 799800..808372 800155..800457 within 0


Gene organization within MGE regions


Location: 799800..808372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL8618_RS04055 (SSAL8618_04055) - 799800..800153 (+) 354 WP_004182758.1 type II toxin-antitoxin system RelE/ParE family toxin -
  SSAL8618_RS04060 (SSAL8618_04060) HI0659 800155..800457 (+) 303 WP_004182757.1 helix-turn-helix domain-containing protein Machinery gene
  SSAL8618_RS04065 (SSAL8618_04065) - 800621..803611 (+) 2991 WP_038675717.1 type I restriction endonuclease subunit R -
  SSAL8618_RS10805 - 803623..805305 (+) 1683 WP_223896513.1 HNH endonuclease family protein -
  SSAL8618_RS04080 (SSAL8618_04080) - 805298..806494 (+) 1197 WP_038675718.1 restriction endonuclease subunit S -
  SSAL8618_RS04085 (SSAL8618_04085) - 806504..808372 (+) 1869 WP_038675719.1 AAA family ATPase -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 10936.85 Da        Isoelectric Point: 9.7589

>NTDB_id=132899 SSAL8618_RS04060 WP_004182757.1 800155..800457(+) (HI0659) [Streptococcus salivarius strain NCTC 8618]
MTPEKNPAIGSSWDDLQKTIFTKEEIAASELRVALMLEIIDARKKQGISQKKLEELSGVKQPVIARMETGKTAPQLDTVL
KILASLGKTLAVVPLDSHVK

Nucleotide


Download         Length: 303 bp        

>NTDB_id=132899 SSAL8618_RS04060 WP_004182757.1 800155..800457(+) (HI0659) [Streptococcus salivarius strain NCTC 8618]
ATGACTCCAGAAAAGAATCCAGCAATTGGAAGTAGTTGGGATGATTTACAGAAAACTATTTTCACTAAAGAGGAAATCGC
GGCAAGTGAACTCCGTGTCGCACTGATGCTTGAGATTATTGATGCTCGTAAAAAACAAGGCATTTCTCAAAAGAAACTTG
AAGAATTGAGTGGTGTCAAACAACCTGTTATCGCACGTATGGAGACAGGTAAAACGGCACCTCAGTTAGATACGGTTCTT
AAAATACTGGCTAGTCTAGGTAAGACATTGGCAGTAGTCCCACTTGATTCACATGTGAAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

60.92

87

0.53

Multiple sequence alignment