Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   AEI25_RS02425 Genome accession   NZ_CP012242
Coordinates   463551..463934 (+) Length   127 a.a.
NCBI ID   WP_002856861.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ055CCUA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 458551..468934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI25_RS02405 (AEI25_02425) - 458630..460564 (-) 1935 WP_260628279.1 RNB domain-containing ribonuclease -
  AEI25_RS02410 (AEI25_02430) ilvC 460683..461705 (+) 1023 WP_002931987.1 ketol-acid reductoisomerase -
  AEI25_RS02415 (AEI25_02435) - 461709..462791 (+) 1083 WP_004309026.1 divergent polysaccharide deacetylase family protein -
  AEI25_RS02420 (AEI25_02440) dprA 462781..463554 (+) 774 WP_260628280.1 DNA-processing protein DprA Machinery gene
  AEI25_RS02425 (AEI25_02445) dprB 463551..463934 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX Machinery gene
  AEI25_RS02430 (AEI25_02450) - 463963..464802 (+) 840 WP_260628429.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  AEI25_RS02435 (AEI25_02455) msrA 464978..465475 (-) 498 WP_260628281.1 peptide-methionine (S)-S-oxide reductase MsrA -
  AEI25_RS02440 (AEI25_02460) ppa 465516..466034 (-) 519 WP_002855031.1 inorganic diphosphatase -
  AEI25_RS02445 (AEI25_02465) adk 466044..466622 (-) 579 WP_260628282.1 adenylate kinase -
  AEI25_RS02450 (AEI25_02470) aspS 466619..468370 (-) 1752 WP_260628283.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14074.57 Da        Isoelectric Point: 9.5433

>NTDB_id=132863 AEI25_RS02425 WP_002856861.1 463551..463934(+) (dprB) [Campylobacter jejuni strain CJ055CCUA]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=132863 AEI25_RS02425 WP_002856861.1 463551..463934(+) (dprB) [Campylobacter jejuni strain CJ055CCUA]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCTGCCAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTATCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGTGGAACAAGTAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449