Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   AEI14_RS03240 Genome accession   NZ_CP012241
Coordinates   591850..592233 (+) Length   127 a.a.
NCBI ID   WP_002858579.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ065CC48     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 586850..597233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI14_RS03220 (AEI14_03235) - 586929..588863 (-) 1935 WP_220553012.1 RNB domain-containing ribonuclease -
  AEI14_RS03225 (AEI14_03240) ilvC 588982..590004 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  AEI14_RS03230 (AEI14_03245) - 590008..591090 (+) 1083 WP_002929722.1 divergent polysaccharide deacetylase family protein -
  AEI14_RS03235 (AEI14_03250) dprA 591080..591853 (+) 774 WP_002858613.1 DNA-processing protein DprA Machinery gene
  AEI14_RS03240 (AEI14_03255) dprB 591850..592233 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  AEI14_RS03245 (AEI14_03260) - 592262..593101 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  AEI14_RS03250 (AEI14_03265) msrA 593277..593774 (-) 498 WP_002929725.1 peptide-methionine (S)-S-oxide reductase MsrA -
  AEI14_RS03255 (AEI14_03270) ppa 593815..594333 (-) 519 WP_002852138.1 inorganic diphosphatase -
  AEI14_RS03260 (AEI14_03275) adk 594343..594921 (-) 579 WP_002858481.1 adenylate kinase -
  AEI14_RS03265 (AEI14_03280) aspS 594918..596669 (-) 1752 WP_002871806.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14064.61 Da        Isoelectric Point: 9.5430

>NTDB_id=132817 AEI14_RS03240 WP_002858579.1 591850..592233(+) (dprB) [Campylobacter jejuni strain CJ065CC48]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=132817 AEI14_RS03240 WP_002858579.1 591850..592233(+) (dprB) [Campylobacter jejuni strain CJ065CC48]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACTTGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGAGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449