Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BF27_RS11300 Genome accession   NZ_CP009902
Coordinates   1850475..1851602 (-) Length   375 a.a.
NCBI ID   WP_000470751.1    Uniprot ID   -
Organism   Bacillus anthracis strain 2002013094     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1845475..1856602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BF27_RS11290 (BF27_2012) gyrA 1845954..1848425 (-) 2472 WP_001282851.1 DNA gyrase subunit A -
  BF27_RS11295 (BF27_2013) gyrB 1848514..1850436 (-) 1923 WP_000435993.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  BF27_RS11300 (BF27_2014) recF 1850475..1851602 (-) 1128 WP_000470751.1 DNA replication/repair protein RecF Machinery gene
  BF27_RS11305 (BF27_2015) yaaA 1851615..1851827 (-) 213 WP_000821367.1 S4 domain-containing protein YaaA -
  BF27_RS11310 (BF27_2016) dnaN 1851955..1853094 (-) 1140 WP_001212527.1 DNA polymerase III subunit beta -
  BF27_RS11315 (BF27_2017) dnaA 1853273..1854613 (-) 1341 WP_000428021.1 chromosomal replication initiator protein DnaA -
  BF27_RS11320 (BF27_2018) rpmH 1855178..1855312 (+) 135 WP_000831908.1 50S ribosomal protein L34 -
  BF27_RS11325 (BF27_2019) rnpA 1855389..1855748 (+) 360 WP_000726628.1 ribonuclease P protein component -
  BF27_RS11330 (BF27_2020) spoIIIJ 1855788..1856555 (+) 768 WP_000727750.1 YidC family membrane integrase SpoIIIJ -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43319.69 Da        Isoelectric Point: 6.7809

>NTDB_id=132808 BF27_RS11300 WP_000470751.1 1850475..1851602(-) (recF) [Bacillus anthracis strain 2002013094]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGTKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFLGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=132808 BF27_RS11300 WP_000470751.1 1850475..1851602(-) (recF) [Bacillus anthracis strain 2002013094]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAAGTAAATGT
AATTATCGGCGAGAACGCGCAAGGGAAAACGAATTTGATGGAAGCTATTTATGTTTTGGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGTGAGCTTATCCGTTGGGATGAAGATTTCGGTCAAATTAAAGGAAAGTTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATCTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAATTGAGTCAATA
TATTGGCGTGATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGCCAAATAGCTCCGGTCTATTTGTATGAATTGAGTCAATATCAAAAGGTGCTCACACAACGA
AATCACTTGCTGAAAAAGATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTACAAAAATATTGCGAAAACGCTTTGAGTTTTTGCATTTACTACAAGAATGGGCAGCTCCAATTCATCGTGGTA
TAAGCCGTGGATTAGAAGAATTAGAAATTGTCTATAAACCGAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCAGTGAAACAACGTGAAATTTTCCTTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCGATTCTTTTACTCGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCGCATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.033

98.133

0.648

Multiple sequence alignment