Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpC   Type   Regulator
Locus tag   BF27_RS10855 Genome accession   NZ_CP009902
Coordinates   1762908..1765343 (-) Length   811 a.a.
NCBI ID   WP_000971179.1    Uniprot ID   A0A063CE58
Organism   Bacillus anthracis strain 2002013094     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context


Location: 1757908..1770343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BF27_RS10835 (BF27_1918) ispD 1758391..1759071 (-) 681 WP_000288292.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  BF27_RS10840 (BF27_1919) - 1759088..1760197 (-) 1110 WP_000919684.1 PIN/TRAM domain-containing protein -
  BF27_RS10845 (BF27_1920) disA 1760358..1761431 (-) 1074 WP_000392168.1 DNA integrity scanning diadenylate cyclase DisA -
  BF27_RS10850 (BF27_1921) radA 1761435..1762811 (-) 1377 WP_001085211.1 DNA repair protein RadA Machinery gene
  BF27_RS10855 (BF27_1922) clpC 1762908..1765343 (-) 2436 WP_000971179.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  BF27_RS10860 (BF27_1923) - 1765366..1766430 (-) 1065 WP_000050832.1 protein arginine kinase -
  BF27_RS10865 (BF27_1924) - 1766435..1766983 (-) 549 WP_000128391.1 UvrB/UvrC motif-containing protein -
  BF27_RS10870 (BF27_1925) ctsR 1767157..1767618 (-) 462 WP_001244563.1 transcriptional regulator CtsR -

Sequence


Protein


Download         Length: 811 a.a.        Molecular weight: 90530.34 Da        Isoelectric Point: 6.4056

>NTDB_id=132805 BF27_RS10855 WP_000971179.1 1762908..1765343(-) (clpC) [Bacillus anthracis strain 2002013094]
MMFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREGEGIAAKALIALGLSPEKVQKEVEALIGRGTEASQTVHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEASSGHQGGSSTNAN
TPTLDSLARDLTVVARENRLDPVIGRGKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVNNEVPETLRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIHVDEPSLDESTQILKGLRDRYEAHHRVSITDDAIDAAVKLSDRYITDRFLPDKAIDLIDEAA
SKVRLRSYTTPPNLKELEVKLEEIRKEKDAAVQSQEFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANV
VSTWTRIPVSKLAQTETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEVEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTIVIMTSNVGAEALKRNKHLGFNVQDESRDYSDMKGKVMDELKKAFRPEFLNRIDEIIVFHMLEKKHI
QEIVTLMVNQLVNRLKEQEIELHLTEGAISAIADKGFDREYGARPLRRAIQKHVEDRLSEELLKGAIEKGQKVIFDVEGE
SFVIHSAEKVK

Nucleotide


Download         Length: 2436 bp        

>NTDB_id=132805 BF27_RS10855 WP_000971179.1 1762908..1765343(-) (clpC) [Bacillus anthracis strain 2002013094]
ATGATGTTTGGAAGATTTACAGAAAGAGCACAGAAAGTATTAGCTTTATCTCAAGAGGAAGCAATTCGTATTGGGCATAA
CAATATTGGAACAGAACATATTTTACTTGGGCTTGTACGCGAAGGTGAAGGAATTGCAGCAAAAGCGTTGATTGCTCTTG
GATTAAGTCCAGAGAAGGTTCAAAAAGAAGTAGAAGCGTTAATCGGACGTGGAACAGAAGCTTCTCAAACTGTACATTAT
ACACCGCGTGCTAAAAAGGTTATTGAGCTGTCTATGGATGAAGCTCGTAAATTAGGTCATTCTTACGTTGGAACAGAACA
TATTTTACTTGGTTTAATCCGCGAAGGTGAAGGGGTAGCGGCACGCGTTTTAAATAACTTAGGTGTTAGCCTAAATAAGG
CAAGACAACAAGTATTGCAACTTCTTGGAAGTAATGAAGCAAGTTCAGGTCACCAAGGTGGTTCTTCAACAAATGCAAAT
ACACCAACACTTGATAGCTTAGCACGTGATTTAACAGTTGTTGCACGTGAAAATCGTTTAGACCCTGTTATTGGACGTGG
TAAAGAAATTCAACGTGTAATTGAAGTTTTAAGCCGTAGAACAAAAAACAATCCTGTATTAATCGGGGAGCCTGGTGTAG
GTAAAACGGCAATTGCGGAAGGATTAGCACAACAAATCGTAAATAATGAAGTTCCTGAAACTTTACGAGATAAGCGTGTT
ATGACACTAGATATGGGTACAGTGGTAGCTGGAACGAAATACCGTGGTGAATTTGAAGACCGTTTGAAGAAAGTAATGGA
TGAAATTCGCCAAGCGGGAAATATCATTCTATTTATTGATGAACTTCATACATTAATCGGTGCAGGTGGAGCAGAAGGTG
CTATTGACGCATCGAATATTTTAAAACCATCTTTAGCTCGTGGGGAATTACAATGTATCGGGGCGACAACGTTAGATGAA
TATCGCAAATATATTGAAAAAGACGCAGCTTTAGAGAGACGTTTCCAACCAATTCACGTTGATGAGCCAAGTTTAGATGA
ATCAACTCAAATTTTGAAAGGTTTACGCGATCGTTATGAGGCACATCACCGCGTATCTATTACAGATGATGCAATTGATG
CAGCTGTAAAGCTTTCAGATCGTTATATTACAGATCGTTTCTTACCAGATAAAGCAATTGATTTAATTGATGAAGCTGCT
TCAAAGGTTCGCTTACGCTCTTATACAACACCACCAAATCTAAAAGAGCTTGAAGTGAAGCTTGAGGAAATTAGAAAAGA
AAAAGATGCAGCTGTACAAAGTCAAGAGTTTGAAAAAGCTGCTTCCTTACGTGATATGGAACAACGTTTACGCGAGAAGT
TAGAAGATACGAAGCGTCAATGGAAAGAACAACAAGGAAAAGAAAACTCAGAAGTGACAGTAGAAGATATTGCAAATGTT
GTTTCTACATGGACTCGTATCCCGGTTTCTAAACTTGCACAAACAGAGACTGATAAATTATTAAACTTAGAATCCATCCT
TCACGATCGTGTTATTGGTCAAGATGAAGCGGTAGTAGCTGTAGCGAAAGCTGTTCGCCGTGCTAGAGCAGGATTGAAAG
ATCCGAAACGTCCAATTGGGTCATTTATTTTCTTAGGGCCAACAGGTGTAGGTAAAACGGAGCTAGCAAGAGCGTTAGCA
GAATCTATGTTCGGTGATGAAGATGCAATGATTCGCATCGATATGTCTGAGTACATGGAGAAGCATTCTACTTCTCGTTT
AGTTGGGTCTCCTCCAGGGTATGTTGGATATGAAGAAGGTGGACAATTAACAGAAAAGGTTCGCCGTAAGCCATATTCAG
TTGTCCTATTAGACGAAGTAGAGAAAGCTCATCCTGATGTGTTTAACATTTTACTACAAGTATTAGAAGATGGTCGCTTA
ACAGATTCGAAAGGGCGTACGGTTGATTTCCGCAATACAATTGTTATTATGACATCTAACGTTGGTGCAGAGGCGTTAAA
ACGTAATAAGCATCTTGGATTTAACGTACAAGATGAGAGCCGCGATTATTCGGATATGAAAGGTAAAGTAATGGATGAGC
TGAAAAAAGCCTTCCGTCCAGAATTCTTAAACCGTATTGATGAAATTATCGTGTTCCATATGCTTGAGAAAAAACATATT
CAAGAGATTGTAACACTTATGGTAAATCAGTTAGTAAATCGCTTAAAAGAGCAAGAAATTGAATTGCATTTAACAGAAGG
AGCAATTTCGGCTATTGCTGATAAAGGGTTTGACCGAGAGTACGGTGCTCGCCCGCTTCGTAGAGCGATTCAGAAACATG
TAGAAGATAGACTATCCGAAGAACTGTTAAAAGGTGCTATTGAGAAAGGGCAGAAAGTTATCTTTGATGTTGAAGGAGAA
TCATTTGTCATTCATAGTGCCGAAAAGGTAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A063CE58

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Bacillus subtilis subsp. subtilis str. 168

85.926

99.877

0.858

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

50.5

98.644

0.498

  clpC Streptococcus thermophilus LMD-9

45.969

100

0.471

  clpC Streptococcus mutans UA159

44.881

100

0.465

  clpC Streptococcus thermophilus LMG 18311

45.476

100

0.465

  clpC Streptococcus pneumoniae D39

46.675

98.274

0.459

  clpC Streptococcus pneumoniae Rx1

46.675

98.274

0.459

  clpC Streptococcus pneumoniae TIGR4

46.375

98.644

0.457

  clpE Streptococcus mutans UA159

53.538

80.148

0.429

  clpE Streptococcus pneumoniae R6

52.705

79.778

0.42

  clpE Streptococcus pneumoniae TIGR4

52.705

79.778

0.42

  clpE Streptococcus pneumoniae Rx1

52.705

79.778

0.42

  clpE Streptococcus pneumoniae D39

52.705

79.778

0.42

  clpC Lactococcus lactis subsp. cremoris KW2

51.893

78.175

0.406


Multiple sequence alignment