Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AEI00_RS04955 Genome accession   NZ_CP012239
Coordinates   956130..956681 (+) Length   183 a.a.
NCBI ID   WP_002877747.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ029CC45     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 951130..961681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI00_RS04920 (AEI00_04965) - 951320..951745 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  AEI00_RS04925 (AEI00_04970) - 951810..952430 (+) 621 WP_014517039.1 NAD(P)H-dependent oxidoreductase -
  AEI00_RS04930 (AEI00_04975) - 952430..953035 (+) 606 WP_002877740.1 NAD(P)H-dependent oxidoreductase -
  AEI00_RS04935 (AEI00_04980) pgsA 953160..953696 (+) 537 WP_002877743.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AEI00_RS04940 (AEI00_04985) rseP 953693..954799 (+) 1107 WP_002877745.1 RIP metalloprotease RseP -
  AEI00_RS04945 (AEI00_04990) - 954792..955657 (+) 866 Protein_963 VirK family antimicrobial peptide resistance protein -
  AEI00_RS04950 (AEI00_04995) rpsF 955744..956121 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  AEI00_RS04955 (AEI00_05000) ssb 956130..956681 (+) 552 WP_002877747.1 single-stranded DNA-binding protein Machinery gene
  AEI00_RS04960 (AEI00_05005) rpsR 956692..956952 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  AEI00_RS04965 (AEI00_05010) lon 957013..959388 (-) 2376 WP_052861434.1 endopeptidase La -
  AEI00_RS04970 (AEI00_05015) - 959405..960052 (-) 648 WP_012006727.1 outer membrane protein assembly factor BamD -
  AEI00_RS04975 (AEI00_05020) fliW 960213..960602 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  AEI00_RS04980 (AEI00_05025) proC 960602..961333 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  AEI00_RS04985 (AEI00_05030) ctsT 961330..961632 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20770.66 Da        Isoelectric Point: 5.0431

>NTDB_id=132776 AEI00_RS04955 WP_002877747.1 956130..956681(+) (ssb) [Campylobacter jejuni strain CJ029CC45]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKTNPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=132776 AEI00_RS04955 WP_002877747.1 956130..956681(+) (ssb) [Campylobacter jejuni strain CJ029CC45]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGCGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
GGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAACAAACCCCGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372