Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AEI18_RS06540 Genome accession   NZ_CP012237
Coordinates   1214087..1214581 (+) Length   164 a.a.
NCBI ID   WP_002859279.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ075CC460     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1209087..1219581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI18_RS06525 (AEI18_06555) - 1210473..1211651 (-) 1179 WP_260629527.1 metal-dependent hydrolase -
  AEI18_RS06530 (AEI18_06560) gpsA 1211661..1212557 (-) 897 WP_002859277.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  AEI18_RS06535 (AEI18_06565) gatB 1212554..1213972 (-) 1419 WP_260629528.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  AEI18_RS06540 (AEI18_06570) luxS 1214087..1214581 (+) 495 WP_002859279.1 S-ribosylhomocysteine lyase Regulator
  AEI18_RS06545 (AEI18_06575) - 1214894..1215886 (+) 993 WP_002869635.1 isopenicillin N synthase family dioxygenase -
  AEI18_RS06550 (AEI18_06580) - 1215897..1216667 (+) 771 WP_002852735.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  AEI18_RS06555 (AEI18_06585) metE 1216679..1218943 (+) 2265 WP_260629529.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18212.25 Da        Isoelectric Point: 7.3250

>NTDB_id=132737 AEI18_RS06540 WP_002859279.1 1214087..1214581(+) (luxS) [Campylobacter jejuni strain CJ075CC460]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWKAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=132737 AEI18_RS06540 WP_002859279.1 1214087..1214581(+) (luxS) [Campylobacter jejuni strain CJ075CC460]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTGTTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATTTAAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCTAAAGCTTGGAAAGCAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.671

98.171

0.713

Multiple sequence alignment