Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M667_RS03645 Genome accession   NZ_CP009887
Coordinates   859949..861310 (+) Length   453 a.a.
NCBI ID   WP_025616507.1    Uniprot ID   A0AAU8RYR6
Organism   Cellulophaga baltica NN016038     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 854949..866310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M667_RS03615 (M667_03615) panC 855553..856398 (+) 846 WP_025616512.1 pantoate--beta-alanine ligase -
  M667_RS03620 (M667_03620) panD 856416..856766 (+) 351 WP_024482662.1 aspartate 1-decarboxylase -
  M667_RS03625 (M667_03625) - 856771..857733 (+) 963 WP_025616511.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  M667_RS03630 (M667_03630) - 857761..858903 (+) 1143 WP_025616510.1 alpha/beta hydrolase -
  M667_RS03635 (M667_03635) - 858969..859364 (+) 396 WP_025616509.1 hypothetical protein -
  M667_RS03645 (M667_03645) radA 859949..861310 (+) 1362 WP_025616507.1 DNA repair protein RadA Machinery gene
  M667_RS03650 (M667_03650) - 861352..862410 (+) 1059 WP_025616506.1 proline iminopeptidase-family hydrolase -
  M667_RS03655 (M667_03655) - 862411..863451 (-) 1041 WP_025616505.1 aldo/keto reductase -
  M667_RS03660 (M667_03660) - 863528..864289 (-) 762 WP_025616504.1 exodeoxyribonuclease III -
  M667_RS03665 (M667_03665) - 864458..864976 (+) 519 WP_025616503.1 hypothetical protein -
  M667_RS03670 (M667_03670) - 865110..866150 (+) 1041 WP_025616502.1 OmpA family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49805.18 Da        Isoelectric Point: 6.3721

>NTDB_id=132695 M667_RS03645 WP_025616507.1 859949..861310(+) (radA) [Cellulophaga baltica NN016038]
MAKTKTAFFCQNCGTQYAKWVGQCTACKEWNTVVEEVVQKEEKSSWKTPTNTTKKVSKPLRVNEISTEKELRLNTFDLEF
NRVLGGGLVPGSLTLLGGEPGIGKSTLLLQIALKLPYKTLYVSGEESQKQIKMRADRIHPNSDTCFILTETKTQNIFKQI
EDTEPDIVVIDSIQTLHSDHIESAAGSISQIRECTAELIKFAKETNTPVILIGHITKDGSIAGPKILEHMVDSVLQFEGD
RNYVYRILRSLKNRFGSTSELGIYEMQGSGLREVNNPSEILISKNDEGLSGTAIASTVEGMRPLMIEIQALVSTAVYGTP
QRSTTGYNAKRLNMLLAVLEKRAGFKLAAKDVFLNITGGISVDDPAIDLAVIAAILSSNEDIAIEKGVCFAAEVGLAGEI
RPVQRVEQRITEAEKLGFDTIFVSKNNKISLKNTQINIQLVAKIEDVANYLFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=132695 M667_RS03645 WP_025616507.1 859949..861310(+) (radA) [Cellulophaga baltica NN016038]
ATGGCTAAAACAAAAACAGCTTTTTTTTGTCAGAATTGCGGCACACAATATGCTAAATGGGTAGGACAATGTACCGCCTG
TAAAGAATGGAATACCGTTGTTGAAGAAGTAGTCCAAAAAGAAGAAAAATCTAGTTGGAAGACTCCGACAAATACCACTA
AGAAAGTTTCCAAACCTTTACGAGTTAATGAAATTAGCACAGAGAAAGAATTACGATTAAATACATTTGACCTAGAGTTT
AATCGTGTTTTAGGCGGCGGTCTTGTTCCTGGCTCTTTGACACTTTTAGGAGGTGAACCTGGCATAGGAAAGAGTACATT
ACTACTCCAAATTGCCTTAAAACTACCCTACAAAACGCTATACGTATCTGGAGAAGAGAGTCAAAAGCAAATAAAAATGC
GTGCAGACCGTATTCACCCCAATAGCGATACTTGTTTTATTCTTACAGAGACGAAAACTCAAAATATCTTTAAGCAGATA
GAAGACACCGAGCCTGATATTGTGGTGATTGATTCCATACAGACGCTACATTCTGATCATATTGAATCTGCCGCCGGAAG
TATTTCTCAAATTAGAGAATGTACTGCAGAGCTTATTAAATTTGCCAAAGAAACCAATACTCCCGTGATCTTAATTGGCC
ATATTACCAAAGATGGTTCTATTGCCGGTCCAAAAATTTTAGAACACATGGTAGATAGTGTGCTTCAATTTGAAGGCGAC
CGCAATTATGTATACCGAATTTTGCGCTCCTTAAAAAATAGGTTTGGTTCTACTTCTGAACTGGGAATTTATGAAATGCA
AGGCAGTGGTTTGCGTGAAGTGAACAATCCGTCTGAAATTCTAATTTCTAAGAATGACGAAGGCTTAAGTGGCACCGCAA
TAGCATCTACTGTAGAAGGAATGCGCCCTCTTATGATAGAAATACAAGCTTTGGTAAGTACTGCTGTTTACGGTACACCT
CAACGTTCTACAACGGGTTATAATGCCAAACGTTTAAACATGCTTTTGGCTGTATTAGAAAAGCGTGCTGGATTTAAATT
AGCCGCAAAAGATGTATTCTTAAACATTACTGGAGGTATTTCCGTAGACGATCCTGCCATTGATTTGGCCGTAATTGCCG
CTATACTTTCTAGCAATGAAGATATTGCCATAGAAAAAGGAGTGTGTTTTGCTGCAGAAGTTGGATTAGCTGGTGAAATA
CGTCCTGTTCAACGCGTAGAACAACGTATTACCGAAGCCGAAAAATTAGGATTTGATACTATTTTCGTTTCCAAGAACAA
TAAAATTAGTCTAAAAAATACGCAGATAAACATTCAACTGGTAGCAAAAATTGAAGATGTAGCCAACTATTTATTTGGAT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(83-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(338-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

47.807

100

0.481
  radA Streptococcus pneumoniae Rx1

47.807

100

0.481
  radA Streptococcus pneumoniae R6

47.807

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.807

100

0.481
  radA Streptococcus mitis SK321

47.473

100

0.477
  radA Streptococcus mitis NCTC 12261

47.473

100

0.477
  radA Bacillus subtilis subsp. subtilis str. 168

50

94.923

0.475

Multiple sequence alignment