Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   XFHB_RS05940 Genome accession   NZ_CP009885
Coordinates   1219512..1219928 (+) Length   138 a.a.
NCBI ID   WP_004085459.1    Uniprot ID   A0A060H0R7
Organism   Xylella fastidiosa strain Hib4     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1214512..1224928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XFHB_RS05925 (XFHB_05560) - 1216314..1217123 (-) 810 WP_228762855.1 DUF6216 family protein -
  XFHB_RS05930 (XFHB_05565) - 1217435..1218310 (-) 876 WP_031336547.1 energy transducer TonB -
  XFHB_RS05935 (XFHB_05570) gshB 1218312..1219256 (-) 945 WP_004085460.1 glutathione synthase -
  XFHB_RS05940 (XFHB_05575) pilG 1219512..1219928 (+) 417 WP_004085459.1 response regulator Regulator
  XFHB_RS05945 (XFHB_05580) - 1219945..1220475 (+) 531 WP_023907585.1 chemotaxis protein CheW -
  XFHB_RS05950 (XFHB_05585) - 1220515..1222557 (+) 2043 WP_031336549.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15325.02 Da        Isoelectric Point: 9.7976

>NTDB_id=132680 XFHB_RS05940 WP_004085459.1 1219512..1219928(+) (pilG) [Xylella fastidiosa strain Hib4]
MIKSVASGKELAGLRVMVIDDSKTIRRTAETLLKREGCEVVTAIDGFEALAKIADQKSQIIFVDIMMPRLDGYQTCALIK
NNNLFKSTPVIMLSSKDGLFDKARGRVVGSEQYLTKPFTREELLSAIRTYVNPLKLAV

Nucleotide


Download         Length: 417 bp        

>NTDB_id=132680 XFHB_RS05940 WP_004085459.1 1219512..1219928(+) (pilG) [Xylella fastidiosa strain Hib4]
ATGATTAAAAGTGTTGCTAGCGGCAAGGAACTCGCAGGTCTTAGGGTGATGGTCATCGATGACTCAAAAACCATAAGACG
TACCGCTGAAACGCTTCTTAAGCGTGAAGGGTGTGAGGTGGTTACCGCTATTGATGGCTTTGAAGCCTTAGCGAAAATTG
CTGATCAGAAGTCGCAGATTATTTTCGTCGATATTATGATGCCGCGCTTGGATGGTTATCAAACTTGCGCGTTGATAAAA
AACAATAACTTGTTTAAGTCGACTCCAGTGATCATGCTTTCTTCTAAAGATGGCTTATTCGATAAGGCGCGCGGTCGTGT
GGTTGGTTCAGAACAATATCTGACCAAACCTTTTACACGCGAGGAGTTGTTAAGTGCCATCCGTACATATGTTAATCCTT
TAAAATTAGCTGTTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A060H0R7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

73.77

88.406

0.652

Multiple sequence alignment