Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   AEH96_RS02850 Genome accession   NZ_CP012235
Coordinates   538584..538967 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain CJ004CC45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 533584..543967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEH96_RS02830 (AEH96_02850) - 533663..535597 (-) 1935 WP_002866492.1 RNB domain-containing ribonuclease -
  AEH96_RS02835 (AEH96_02855) ilvC 535716..536738 (+) 1023 WP_002866493.1 ketol-acid reductoisomerase -
  AEH96_RS02840 (AEH96_02860) - 536742..537824 (+) 1083 WP_002876692.1 divergent polysaccharide deacetylase family protein -
  AEH96_RS02845 (AEH96_02865) dprA 537814..538587 (+) 774 WP_002866495.1 DNA-processing protein DprA Machinery gene
  AEH96_RS02850 (AEH96_02870) dprB 538584..538967 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  AEH96_RS02855 (AEH96_02875) - 538996..539835 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  AEH96_RS02860 (AEH96_02880) msrA 540011..540508 (-) 498 WP_002866497.1 peptide-methionine (S)-S-oxide reductase MsrA -
  AEH96_RS02865 (AEH96_02885) ppa 540549..541067 (-) 519 WP_002855031.1 inorganic diphosphatase -
  AEH96_RS02870 (AEH96_02890) adk 541077..541655 (-) 579 WP_002855137.1 adenylate kinase -
  AEH96_RS02875 (AEH96_02895) aspS 541652..543403 (-) 1752 WP_032603579.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=132674 AEH96_RS02850 WP_002852281.1 538584..538967(+) (dprB) [Campylobacter jejuni strain CJ004CC45]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=132674 AEH96_RS02850 WP_002852281.1 538584..538967(+) (dprB) [Campylobacter jejuni strain CJ004CC45]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGTATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATTAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTTGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449