Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   AEI24_RS03135 Genome accession   NZ_CP012234
Coordinates   575002..575385 (+) Length   127 a.a.
NCBI ID   WP_002856861.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ048CCUA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 570002..580385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI24_RS03115 (AEI24_03085) - 570081..572015 (-) 1935 WP_165434299.1 RNB domain-containing ribonuclease -
  AEI24_RS03120 (AEI24_03090) ilvC 572134..573156 (+) 1023 WP_002931987.1 ketol-acid reductoisomerase -
  AEI24_RS03125 (AEI24_03095) - 573160..574242 (+) 1083 WP_002931999.1 divergent polysaccharide deacetylase family protein -
  AEI24_RS03130 (AEI24_03100) dprA 574232..575005 (+) 774 WP_002932002.1 DNA-processing protein DprA Machinery gene
  AEI24_RS03135 (AEI24_03105) dprB 575002..575385 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX Machinery gene
  AEI24_RS03140 (AEI24_03110) - 575414..576253 (+) 840 WP_079264093.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  AEI24_RS03145 (AEI24_03115) msrA 576429..576925 (-) 497 Protein_620 peptide-methionine (S)-S-oxide reductase MsrA -
  AEI24_RS03150 (AEI24_03120) ppa 576966..577484 (-) 519 WP_002855031.1 inorganic diphosphatase -
  AEI24_RS03155 (AEI24_03125) adk 577494..578072 (-) 579 WP_165434298.1 adenylate kinase -
  AEI24_RS03160 (AEI24_03130) aspS 578069..579820 (-) 1752 WP_002854803.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14074.57 Da        Isoelectric Point: 9.5433

>NTDB_id=132633 AEI24_RS03135 WP_002856861.1 575002..575385(+) (dprB) [Campylobacter jejuni strain CJ048CCUA]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=132633 AEI24_RS03135 WP_002856861.1 575002..575385(+) (dprB) [Campylobacter jejuni strain CJ048CCUA]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCCAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGTGGAACAAGTAAAGAAGCTTTAGGATACGGTGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449

Multiple sequence alignment