Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KPNIH29_RS09345 Genome accession   NZ_CP009863
Coordinates   1929953..1930549 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae subsp. pneumoniae strain KPNIH29     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1924953..1935549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPNIH29_RS09325 (KPNIH29_09325) - 1925145..1926902 (-) 1758 WP_004147851.1 Lon protease family protein -
  KPNIH29_RS09330 (KPNIH29_09330) matP 1927088..1927540 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  KPNIH29_RS09335 (KPNIH29_09335) ompA 1927672..1928742 (-) 1071 WP_002898408.1 porin OmpA -
  KPNIH29_RS09340 (KPNIH29_09340) sulA 1929095..1929604 (-) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  KPNIH29_RS09345 (KPNIH29_09345) sxy/tfoX 1929953..1930549 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  KPNIH29_RS09350 (KPNIH29_09350) yccS 1930563..1932698 (-) 2136 WP_002898422.1 YccS family putative transporter -
  KPNIH29_RS09355 (KPNIH29_09355) - 1932716..1933162 (-) 447 WP_002898425.1 YccF domain-containing protein -
  KPNIH29_RS09360 (KPNIH29_09360) helD 1933287..1935341 (+) 2055 WP_009485779.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=132613 KPNIH29_RS09345 WP_004179217.1 1929953..1930549(+) (sxy/tfoX) [Klebsiella pneumoniae subsp. pneumoniae strain KPNIH29]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=132613 KPNIH29_RS09345 WP_004179217.1 1929953..1930549(+) (sxy/tfoX) [Klebsiella pneumoniae subsp. pneumoniae strain KPNIH29]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment