Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ECONIH1_RS06055 Genome accession   NZ_CP009859
Coordinates   1212153..1212782 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ECONIH1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1207153..1217782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECONIH1_RS06030 (ECONIH1_06030) ycbZ 1207553..1209313 (-) 1761 WP_000156473.1 Lon protease family protein -
  ECONIH1_RS06035 (ECONIH1_06035) matP 1209499..1209951 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ECONIH1_RS06040 (ECONIH1_06040) ompA 1210028..1211068 (-) 1041 WP_022645481.1 porin OmpA -
  ECONIH1_RS06050 (ECONIH1_06050) sulA 1211425..1211934 (-) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  ECONIH1_RS06055 (ECONIH1_06055) sxy/tfoX 1212153..1212782 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ECONIH1_RS06060 (ECONIH1_06060) yccS 1212745..1214907 (-) 2163 WP_072258314.1 YccS family putative transporter -
  ECONIH1_RS06065 (ECONIH1_06065) yccF 1214917..1215363 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ECONIH1_RS06070 (ECONIH1_06070) helD 1215486..1217540 (+) 2055 WP_038431999.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=132586 ECONIH1_RS06055 WP_000839153.1 1212153..1212782(+) (sxy/tfoX) [Escherichia coli strain ECONIH1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=132586 ECONIH1_RS06055 WP_000839153.1 1212153..1212782(+) (sxy/tfoX) [Escherichia coli strain ECONIH1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment