Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   FORC4_RS18835 Genome accession   NZ_CP009848
Coordinates   746773..747954 (-) Length   393 a.a.
NCBI ID   WP_021450908.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_004     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 741773..752954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC4_RS18820 (FORC4_3594) - 743075..743623 (+) 549 WP_015313129.1 GNAT family N-acetyltransferase -
  FORC4_RS18825 (FORC4_3595) - 743710..744327 (-) 618 WP_005498603.1 HAD family hydrolase -
  FORC4_RS18830 (FORC4_3596) cqsS 744647..746695 (+) 2049 WP_025540552.1 response regulator Regulator
  FORC4_RS18835 (FORC4_3597) cqsA 746773..747954 (-) 1182 WP_021450908.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  FORC4_RS18840 (FORC4_3598) ylqF 748309..749253 (-) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  FORC4_RS18845 (FORC4_3599) - 749542..750279 (-) 738 WP_025795864.1 EAL domain-containing protein -
  FORC4_RS18850 (FORC4_3600) - 750459..752711 (-) 2253 WP_057619984.1 M9 family metallopeptidase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43824.14 Da        Isoelectric Point: 6.4984

>NTDB_id=132581 FORC4_RS18835 WP_021450908.1 746773..747954(-) (cqsA) [Vibrio parahaemolyticus strain FORC_004]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNVPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=132581 FORC4_RS18835 WP_021450908.1 746773..747954(-) (cqsA) [Vibrio parahaemolyticus strain FORC_004]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAACACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCCGTGGTAATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGATGCAATTTCTGAACGAGATGACAATGTCGTGATGTCA
GCAATCTTCTTGCAAGATGATCAATCAAAGCCCGCCTTTGAGCACCAGCTAGCGACGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCGCCAAACGTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGCGCGCAGATTCATCCTTTCATGCACAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCGGTGTATAGCACGATTGGCACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTCGATTGTGGCTTAGTGGTAGATGAATCCCATTCATTGGGCACAC
ACGGACCAAAGGGTTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATATTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCGCAAGAAGTCGTGCGTCTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCGATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGAGACTTTCTTGAAGAAAGAGACGTTTTCGGTGC
GGTGTTTTGCCGACCTGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGATTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.656

98.473

0.578

Multiple sequence alignment