Detailed information NTG0132562

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FORC4_RS12545
• Genome accession: NZ_CP009847
• Coordinates: 2744839..2745828 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain FORC_004
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2739839..2750828

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC4_RS12530 (FORC4_2418)	recA	2740388..2741431 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
FORC4_RS12535 (FORC4_2419)	pncC	2741632..2742114 (-)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
FORC4_RS12540 (FORC4_2420)	mutS	2742199..2744760 (+)	2562	WP_025546664.1	DNA mismatch repair protein MutS	-
FORC4_RS12545 (FORC4_2421)	rpoS	2744839..2745828 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
FORC4_RS12550 (FORC4_2422)	-	2745909..2746832 (-)	924	WP_025546666.1	peptidoglycan DD-metalloendopeptidase family protein	-
FORC4_RS12555 (FORC4_2423)	-	2746847..2747473 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FORC4_RS12560 (FORC4_2424)	surE	2747473..2748249 (-)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
FORC4_RS12565 (FORC4_2425)	truD	2748249..2749292 (-)	1044	WP_024702352.1	tRNA pseudouridine(13) synthase TruD	-
FORC4_RS12570 (FORC4_2426)	ispF	2749339..2749815 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FORC4_RS12575 (FORC4_2427)	ispD	2749833..2750537 (-)	705	WP_057619582.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FORC4_RS12580 (FORC4_2428)	ftsB	2750539..2750820 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=132562 FORC4_RS12545 WP_005478537.1 2744839..2745828(-) (rpoS) [Vibrio parahaemolyticus strain FORC_004]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=132562 FORC4_RS12545 WP_005478537.1 2744839..2745828(-) (rpoS) [Vibrio parahaemolyticus strain FORC_004]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCGCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTTGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851