Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FORC4_RS06285 Genome accession   NZ_CP009847
Coordinates   1376954..1378375 (-) Length   473 a.a.
NCBI ID   WP_057619303.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_004     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1371954..1383375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC4_RS06260 (FORC4_1193) - 1372518..1373168 (+) 651 WP_005480776.1 thiopurine S-methyltransferase -
  FORC4_RS06265 (FORC4_1194) purT 1373270..1374445 (-) 1176 WP_005495504.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  FORC4_RS06270 (FORC4_1195) cdd 1374593..1375480 (-) 888 WP_015296604.1 cytidine deaminase -
  FORC4_RS06275 (FORC4_1196) - 1375845..1376522 (-) 678 WP_005454891.1 LrgB family protein -
  FORC4_RS06280 (FORC4_1197) - 1376524..1376898 (-) 375 WP_005455074.1 CidA/LrgA family protein -
  FORC4_RS06285 (FORC4_1198) sbcB 1376954..1378375 (-) 1422 WP_057619303.1 exodeoxyribonuclease I Machinery gene
  FORC4_RS06290 (FORC4_1199) - 1378531..1379904 (-) 1374 WP_057619304.1 L-cystine transporter -
  FORC4_RS06295 (FORC4_1200) - 1380097..1380792 (-) 696 WP_057619305.1 NAD(P)H-binding protein -
  FORC4_RS06300 (FORC4_1201) cobT 1381476..1382519 (+) 1044 WP_021486537.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  FORC4_RS06305 (FORC4_1202) - 1382564..1383316 (+) 753 WP_057619672.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54631.94 Da        Isoelectric Point: 4.9244

>NTDB_id=132551 FORC4_RS06285 WP_057619303.1 1376954..1378375(-) (sbcB) [Vibrio parahaemolyticus strain FORC_004]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKSKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQYPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=132551 FORC4_RS06285 WP_057619303.1 1376954..1378375(-) (sbcB) [Vibrio parahaemolyticus strain FORC_004]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACCGGCATTACGCCGCAAAAAGCGATGCAAGAAGGCCTATCCGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAATCCAAAACCACTAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTCACGCGTTACACCTGTTATCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTACGTCCTGAAGGCGTAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCACAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCACAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACTCCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGCATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGTACCCTGAGATTAGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGCCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGGTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAGGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTGGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.493

100

0.795

Multiple sequence alignment