Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AEI06_RS05190 Genome accession   NZ_CP012232
Coordinates   981952..982503 (+) Length   183 a.a.
NCBI ID   WP_002877747.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ511CC45     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 976952..987503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI06_RS05155 (AEI06_05190) - 977141..977566 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  AEI06_RS05160 (AEI06_05195) - 977630..978252 (+) 623 Protein_1018 NAD(P)H-dependent oxidoreductase -
  AEI06_RS05165 (AEI06_05200) - 978252..978857 (+) 606 WP_002874060.1 NAD(P)H-dependent oxidoreductase -
  AEI06_RS05170 (AEI06_05205) pgsA 978982..979518 (+) 537 WP_002877743.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AEI06_RS05175 (AEI06_05210) rseP 979515..980621 (+) 1107 WP_002877745.1 RIP metalloprotease RseP -
  AEI06_RS05180 (AEI06_05215) - 980614..981479 (+) 866 Protein_1022 VirK family antimicrobial peptide resistance protein -
  AEI06_RS05185 (AEI06_05220) rpsF 981566..981943 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  AEI06_RS05190 (AEI06_05225) ssb 981952..982503 (+) 552 WP_002877747.1 single-stranded DNA-binding protein Machinery gene
  AEI06_RS05195 (AEI06_05230) rpsR 982514..982774 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  AEI06_RS05200 (AEI06_05235) lon 982835..985210 (-) 2376 WP_002868636.1 endopeptidase La -
  AEI06_RS05205 (AEI06_05240) bamD 985227..985874 (-) 648 WP_002877748.1 outer membrane protein assembly factor BamD -
  AEI06_RS05210 (AEI06_05245) fliW 986035..986424 (+) 390 WP_002877749.1 flagellar assembly protein FliW -
  AEI06_RS05215 (AEI06_05250) proC 986424..987155 (+) 732 WP_002855729.1 pyrroline-5-carboxylate reductase Machinery gene
  AEI06_RS05220 (AEI06_05255) ctsT 987152..987454 (+) 303 WP_002877750.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20770.66 Da        Isoelectric Point: 5.0431

>NTDB_id=132544 AEI06_RS05190 WP_002877747.1 981952..982503(+) (ssb) [Campylobacter jejuni strain CJ511CC45]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKTNPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=132544 AEI06_RS05190 WP_002877747.1 981952..982503(+) (ssb) [Campylobacter jejuni strain CJ511CC45]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGCGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
GGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAACAAACCCCGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372