Detailed information NTG0132541

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: FORC4_RS01340
• Genome accession: NZ_CP009847
• Coordinates: 292168..293214 (-)
• Length: 348 a.a.
• NCBI ID: WP_257720934.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain FORC_004
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 287168..298214

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC4_RS01310 (FORC4_0249)	zapB	287337..287579 (+)	243	WP_005481417.1	cell division protein ZapB	-
FORC4_RS01315 (FORC4_0250)	rraA	287684..288196 (-)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
FORC4_RS01320 (FORC4_0251)	-	288273..289190 (-)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
FORC4_RS01325 (FORC4_0252)	hslU	289375..290706 (-)	1332	WP_025441237.1	HslU--HslV peptidase ATPase subunit	-
FORC4_RS01330 (FORC4_0253)	hslV	290730..291281 (-)	552	WP_005455873.1	ATP-dependent protease subunit HslV	-
FORC4_RS01335 (FORC4_0254)	ftsN	291446..291991 (-)	546	WP_005481405.1	cell division protein FtsN	-
FORC4_RS01340 (FORC4_0255)	cytR	292168..293214 (-)	1047	WP_257720934.1	DNA-binding transcriptional regulator CytR	Regulator
FORC4_RS01345 (FORC4_0256)	priA	293508..295712 (-)	2205	WP_005496931.1	primosomal protein N'	-
FORC4_RS01350 (FORC4_0257)	rpmE	296008..296229 (+)	222	WP_005457203.1	50S ribosomal protein L31	-
FORC4_RS01355 (FORC4_0258)	rpsJ	296687..296998 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
FORC4_RS01360 (FORC4_0259)	rplC	297013..297642 (+)	630	WP_005456132.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38475.20 Da
• Isoelectric Point: 6.7430

>NTDB_id=132541 FORC4_RS01340 WP_257720934.1 292168..293214(-) (cytR) [Vibrio parahaemolyticus strain FORC_004]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRTLMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide

• Length: 1047 bp

>NTDB_id=132541 FORC4_RS01340 WP_257720934.1 292168..293214(-) (cytR) [Vibrio parahaemolyticus strain FORC_004]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAACATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCAGCTATGGAACATGGCTACCTCGTACTGCT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGTACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACT
TGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACACAGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGTGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCACTGCGACACCATGGCAATCGGCGCAATCCA
AGAAGCCAAACGACTCGGTCTGCGCGTTCCGCAAGATTTGTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTACTT
AAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (181-341)

• Bacterial regulatory proteins, lacI family (LacI) (16-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	99.713	100	0.997
cytR	Vibrio cholerae C6706	90.419	95.977	0.868