Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AEI03_RS04540 Genome accession   NZ_CP012229
Coordinates   880384..880878 (+) Length   164 a.a.
NCBI ID   WP_002860433.1    Uniprot ID   Q5HTR6
Organism   Campylobacter jejuni strain CJ508CC45     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 875384..885878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI03_RS04525 (AEI03_04550) - 876770..877948 (-) 1179 WP_002877097.1 metal-dependent hydrolase -
  AEI03_RS04530 (AEI03_04555) gpsA 877958..878854 (-) 897 WP_075888380.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  AEI03_RS04535 (AEI03_04560) gatB 878851..880269 (-) 1419 WP_002868575.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  AEI03_RS04540 (AEI03_04565) luxS 880384..880878 (+) 495 WP_002860433.1 S-ribosylhomocysteine lyase Regulator
  AEI03_RS04545 (AEI03_04570) - 881190..882181 (+) 992 Protein_889 isopenicillin N synthase family dioxygenase -
  AEI03_RS04550 (AEI03_04575) - 882192..882962 (+) 771 WP_052861409.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  AEI03_RS04555 (AEI03_04580) metE 882974..885238 (+) 2265 WP_002877092.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18271.22 Da        Isoelectric Point: 6.3290

>NTDB_id=132455 AEI03_RS04540 WP_002860433.1 880384..880878(+) (luxS) [Campylobacter jejuni strain CJ508CC45]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=132455 AEI03_RS04540 WP_002860433.1 880384..880878(+) (luxS) [Campylobacter jejuni strain CJ508CC45]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTGTTTGATTTGCGTTTTTGTATACCAAATAAAGACATTATGAGCGAAAAAGGTACAC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATCTTAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCAAAAGCTTGGGAAGAAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5HTR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707