Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   AEI03_RS01780 Genome accession   NZ_CP012229
Coordinates   336150..336533 (+) Length   127 a.a.
NCBI ID   WP_002898550.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ508CC45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 331150..341533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI03_RS01760 (AEI03_01760) - 331229..333163 (-) 1935 WP_004309024.1 RNB domain-containing ribonuclease -
  AEI03_RS01765 (AEI03_01765) ilvC 333282..334304 (+) 1023 WP_002921147.1 ketol-acid reductoisomerase -
  AEI03_RS01770 (AEI03_01770) - 334308..335390 (+) 1083 WP_004309026.1 divergent polysaccharide deacetylase family protein -
  AEI03_RS01775 (AEI03_01775) dprA 335380..336153 (+) 774 WP_002898548.1 DNA-processing protein DprA Machinery gene
  AEI03_RS01780 (AEI03_01780) dprB 336150..336533 (+) 384 WP_002898550.1 Holliday junction resolvase RuvX Machinery gene
  AEI03_RS01785 (AEI03_01785) - 336562..337401 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  AEI03_RS01790 (AEI03_01790) msrA 337577..338074 (-) 498 WP_002898554.1 peptide-methionine (S)-S-oxide reductase MsrA -
  AEI03_RS01795 (AEI03_01795) ppa 338115..338633 (-) 519 WP_002852138.1 inorganic diphosphatase -
  AEI03_RS01800 (AEI03_01800) adk 338643..339221 (-) 579 WP_002872374.1 adenylate kinase -
  AEI03_RS01805 (AEI03_01805) aspS 339218..340969 (-) 1752 WP_004309032.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14144.66 Da        Isoelectric Point: 9.0848

>NTDB_id=132441 AEI03_RS01780 WP_002898550.1 336150..336533(+) (dprB) [Campylobacter jejuni strain CJ508CC45]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGVANTRKKDGKLDSLAAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=132441 AEI03_RS01780 WP_002898550.1 336150..336533(+) (dprB) [Campylobacter jejuni strain CJ508CC45]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGTTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGAATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGATTCTTTAGCTGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449

Multiple sequence alignment