Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   OB04_RS12890 Genome accession   NZ_CP009796
Coordinates   2487426..2488193 (-) Length   255 a.a.
NCBI ID   WP_038429317.1    Uniprot ID   -
Organism   Bacillus subtilis strain SG6     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2482426..2493193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OB04_RS12870 (OB04_02523) ppsR 2482601..2483413 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  OB04_RS12875 (OB04_02524) ccpN 2483439..2484077 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  OB04_RS12880 (OB04_02525) glyS 2484210..2486249 (-) 2040 WP_038429316.1 glycine--tRNA ligase subunit beta -
  OB04_RS12885 (OB04_02526) glyQ 2486242..2487129 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  OB04_RS12890 (OB04_02527) recO 2487426..2488193 (-) 768 WP_038429317.1 DNA repair protein RecO Machinery gene
  OB04_RS21725 (OB04_02528) yqzL 2488230..2488373 (-) 144 WP_003230053.1 YqzL family protein -
  OB04_RS12900 (OB04_02529) era 2488521..2489426 (-) 906 WP_003230051.1 GTPase Era -
  OB04_RS12905 (OB04_02530) - 2489407..2489817 (-) 411 WP_003230049.1 cytidine deaminase -
  OB04_RS12910 (OB04_02531) unpK 2489936..2490307 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  OB04_RS12915 (OB04_02532) ybeY 2490288..2490761 (-) 474 WP_032722131.1 rRNA maturation RNase YbeY -
  OB04_RS12920 (OB04_02533) pgpH 2490762..2492900 (-) 2139 WP_082200964.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29313.99 Da        Isoelectric Point: 8.3080

>NTDB_id=132345 OB04_RS12890 WP_038429317.1 2487426..2488193(-) (recO) [Bacillus subtilis strain SG6]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGAMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=132345 OB04_RS12890 WP_038429317.1 2487426..2488193(-) (recO) [Bacillus subtilis strain SG6]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGCTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAACCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment