Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   OB04_RS05745 Genome accession   NZ_CP009796
Coordinates   1079507..1080085 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain SG6     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1074507..1085085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OB04_RS05725 (OB04_01123) hemAT 1075018..1076316 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  OB04_RS05730 (OB04_01124) comW 1076455..1077984 (-) 1530 WP_038428744.1 FAD-dependent oxidoreductase -
  OB04_RS05735 (OB04_01125) yhxC 1078096..1078953 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  OB04_RS05740 (OB04_01126) yhzC 1078981..1079214 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  OB04_RS05745 (OB04_01127) comK 1079507..1080085 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  OB04_RS05750 (OB04_01128) yhxD 1080132..1081031 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  OB04_RS05755 (OB04_01129) yhjA 1081248..1081517 (+) 270 WP_029726293.1 excalibur calcium-binding domain-containing protein -
  OB04_RS05760 (OB04_01130) yhjB 1081561..1083030 (-) 1470 WP_029726292.1 sodium:solute symporter -
  OB04_RS05765 (OB04_01131) yhjC 1083027..1083227 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  OB04_RS05770 (OB04_01132) - 1083426..1083797 (-) 372 WP_014476361.1 hypothetical protein -
  OB04_RS05775 (OB04_01133) yhjE 1083949..1084572 (+) 624 WP_010886465.1 VTT domain-containing protein -
  OB04_RS05780 (OB04_01134) lepB 1084574..1085080 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=132314 OB04_RS05745 WP_029317573.1 1079507..1080085(+) (comK) [Bacillus subtilis strain SG6]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=132314 OB04_RS05745 WP_029317573.1 1079507..1080085(+) (comK) [Bacillus subtilis strain SG6]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment