Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   OB04_RS01800 Genome accession   NZ_CP009796
Coordinates   330696..331145 (-) Length   149 a.a.
NCBI ID   WP_017696127.1    Uniprot ID   -
Organism   Bacillus subtilis strain SG6     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 325696..336145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OB04_RS01765 (OB04_00343) yckA 325849..326529 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  OB04_RS01770 (OB04_00344) yckB 326539..327402 (-) 864 WP_029727074.1 transporter substrate-binding domain-containing protein -
  OB04_RS22135 - 327564..327761 (+) 198 WP_119122841.1 hypothetical protein -
  OB04_RS01780 (OB04_00346) yckC 327780..328235 (+) 456 WP_038428340.1 RDD family protein -
  OB04_RS01785 (OB04_00347) yckD 328317..328649 (+) 333 WP_015252849.1 YckD family protein -
  OB04_RS01790 (OB04_00348) bglC 328801..330234 (+) 1434 WP_038428341.1 6-phospho-beta-glucosidase -
  OB04_RS01795 (OB04_00349) nin/comJ 330271..330669 (-) 399 WP_017696126.1 DNA-entry nuclease inhibitor Regulator
  OB04_RS01800 (OB04_00350) nucA/comI 330696..331145 (-) 450 WP_017696127.1 DNA-entry nuclease Machinery gene
  OB04_RS01805 (OB04_00351) tlpC 331313..333034 (-) 1722 WP_038428342.1 methyl-accepting chemotaxis protein TlpC -
  OB04_RS01810 (OB04_00352) hxlB 333145..333702 (-) 558 WP_038428343.1 6-phospho-3-hexuloisomerase -
  OB04_RS01815 (OB04_00353) hxlA 333708..334340 (-) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  OB04_RS01820 (OB04_00354) hxlR 334574..334936 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16412.34 Da        Isoelectric Point: 4.5282

>NTDB_id=132304 OB04_RS01800 WP_017696127.1 330696..331145(-) (nucA/comI) [Bacillus subtilis strain SG6]
MNITTDIIKTILLVIVIIAAAAAGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=132304 OB04_RS01800 WP_017696127.1 330696..331145(-) (nucA/comI) [Bacillus subtilis strain SG6]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGCCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGAT
ATCCCGAAACGGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98

Multiple sequence alignment