Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   XFUD_RS11835 Genome accession   NZ_CP009790
Coordinates   2419836..2421248 (-) Length   470 a.a.
NCBI ID   WP_031338065.1    Uniprot ID   -
Organism   Xylella fastidiosa strain U24d     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2414836..2426248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XFUD_RS11810 (XFUD_11080) - 2415000..2415446 (+) 447 WP_010894960.1 pilin -
  XFUD_RS11820 (XFUD_11090) - 2416743..2417189 (+) 447 WP_010894963.1 pilin -
  XFUD_RS11825 (XFUD_11095) - 2417627..2417857 (-) 231 WP_010894964.1 hypothetical protein -
  XFUD_RS11830 (XFUD_11100) pilB 2418009..2419742 (+) 1734 WP_010894965.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XFUD_RS11835 (XFUD_11105) pilR 2419836..2421248 (-) 1413 WP_031338065.1 sigma-54 dependent transcriptional regulator Regulator
  XFUD_RS11840 (XFUD_11110) - 2421434..2423044 (-) 1611 WP_010894967.1 ATP-binding protein -
  XFUD_RS11845 (XFUD_11115) sucC 2423299..2424462 (+) 1164 WP_010894968.1 ADP-forming succinate--CoA ligase subunit beta -
  XFUD_RS11850 (XFUD_11120) sucD 2424491..2425363 (+) 873 WP_010894969.1 succinate--CoA ligase subunit alpha -
  XFUD_RS11855 (XFUD_11125) - 2425650..2426234 (+) 585 WP_229716517.1 hypothetical protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 51325.24 Da        Isoelectric Point: 7.2157

>NTDB_id=132263 XFUD_RS11835 WP_031338065.1 2419836..2421248(-) (pilR) [Xylella fastidiosa strain U24d]
MNQSRSALIVDDERDIRELLVLTLGRMGLRIRTAANLAQAYALLESDSFNLCITDMRLPDGSGIELVNKIVRHYPRTPVA
MITAFGSIELAVEALKEGAFDFVSKPVDLNVLRGMVRHALELNNRERSVVSSQPQSPSQRLLGESLPMAQLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQSVRAAGAFVPVNCGAIPVDLMESEFFGHKKGSFTGAHTDKPGLFQSAGGGTLFLD
EVAELPLHMQVKLLRAIQEKSIRPIGATVEVPVDVRILSATHQDLSDLIANGRFRHDLYYRINVIEIRVPPLRERAGDLP
HLAAAIVARLAHTHGRAVPLLSPSALEALDHYSFPGNVRELENILERALALTEDDHIGVADLHLPQGSLHGQGLPLPLVP
TVLPIVPVDASASVEGENTPAALPSYMEQLERAAIQKALEENRWNKTKTAAKLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=132263 XFUD_RS11835 WP_031338065.1 2419836..2421248(-) (pilR) [Xylella fastidiosa strain U24d]
ATGAATCAATCCCGCAGTGCTCTGATTGTCGATGACGAGCGCGACATCCGTGAACTTTTGGTCCTTACGCTAGGACGTAT
GGGGCTGCGTATCAGAACGGCAGCTAATCTGGCACAAGCATACGCGTTACTTGAGTCTGACTCGTTCAATCTTTGTATCA
CCGACATGCGTTTACCTGACGGCAGTGGCATTGAGCTGGTGAACAAGATTGTGCGTCATTATCCACGTACCCCGGTGGCC
ATGATCACTGCTTTTGGCAGTATCGAACTGGCGGTAGAGGCGCTCAAGGAAGGTGCTTTTGACTTTGTCAGCAAACCTGT
TGATCTGAATGTCCTGCGAGGCATGGTCCGTCATGCTTTGGAATTGAACAATCGTGAACGCTCTGTTGTGTCAAGTCAGC
CACAAAGCCCCAGCCAACGTCTCCTTGGCGAGTCGTTACCGATGGCTCAGCTTCGGGCCACCATCGCTAAAGTGGCGCGT
AGTCAAGCTCCGGTTTATATCCTTGGTGAATCCGGAGTTGGTAAGGAATTGGTTGCACGTACGATCCACGAACAGAGTGT
CCGTGCTGCTGGGGCGTTCGTGCCGGTTAACTGTGGTGCGATCCCTGTGGATCTTATGGAAAGCGAATTTTTCGGTCACA
AGAAAGGGAGTTTCACCGGTGCGCATACTGATAAACCAGGCTTATTCCAAAGTGCTGGCGGCGGTACTTTATTCCTGGAT
GAAGTTGCCGAATTACCCTTGCACATGCAAGTTAAATTGCTGCGTGCGATTCAGGAGAAATCGATACGGCCAATCGGTGC
AACCGTTGAGGTACCAGTAGATGTGCGTATTTTATCGGCGACTCACCAAGATCTGAGTGACCTGATTGCCAATGGCCGCT
TCCGTCACGATTTGTACTACCGCATCAATGTGATCGAGATACGTGTTCCACCGCTACGTGAGCGTGCTGGCGATTTGCCG
CATCTTGCTGCAGCCATTGTAGCTCGCTTGGCGCACACGCATGGGCGGGCGGTCCCGTTGCTTTCACCCTCCGCCTTGGA
GGCGTTAGATCATTATTCGTTCCCGGGTAATGTGCGTGAACTGGAGAACATTCTGGAGCGTGCTCTAGCACTGACTGAAG
ATGATCATATCGGTGTCGCGGATCTGCATCTGCCCCAGGGCAGTTTGCATGGACAGGGATTGCCGCTCCCGTTAGTGCCC
ACAGTTCTCCCGATTGTGCCTGTGGACGCATCGGCATCGGTGGAGGGTGAGAATACGCCGGCTGCCTTGCCGTCGTATAT
GGAGCAGCTGGAACGTGCTGCCATTCAAAAGGCGTTGGAAGAGAATCGCTGGAATAAAACAAAGACAGCCGCAAAACTTG
GCATCACTTTCCGTGCCTTGCGTTACAAACTAAAGAAGCTGGGCATGGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(427-467)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.422

99.787

0.583
  pilR Acinetobacter baumannii strain A118

47.269

100

0.479

Multiple sequence alignment