Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AEI23_RS06530 Genome accession   NZ_CP012221
Coordinates   1205349..1205843 (+) Length   164 a.a.
NCBI ID   WP_002857890.1    Uniprot ID   Q9PN97
Organism   Campylobacter jejuni strain CJ018CCUA     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1200349..1210843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI23_RS06515 (AEI23_06540) - 1201735..1202913 (-) 1179 WP_115766845.1 metal-dependent hydrolase -
  AEI23_RS06520 (AEI23_06545) gpsA 1202923..1203819 (-) 897 WP_002859277.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  AEI23_RS06525 (AEI23_06550) gatB 1203816..1205234 (-) 1419 WP_002914256.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  AEI23_RS06530 (AEI23_06555) luxS 1205349..1205843 (+) 495 WP_002857890.1 S-ribosylhomocysteine lyase Regulator
  AEI23_RS06535 (AEI23_06560) - 1206154..1207146 (+) 993 WP_002867376.1 isopenicillin N synthase family oxygenase -
  AEI23_RS06540 (AEI23_06565) - 1207157..1207927 (+) 771 WP_002855781.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  AEI23_RS06545 (AEI23_06570) metE 1207939..1210203 (+) 2265 WP_115651553.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18209.18 Da        Isoelectric Point: 6.6314

>NTDB_id=132227 AEI23_RS06530 WP_002857890.1 1205349..1205843(+) (luxS) [Campylobacter jejuni strain CJ018CCUA]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSIAKAWEAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIINNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=132227 AEI23_RS06530 WP_002857890.1 1205349..1205843(+) (luxS) [Campylobacter jejuni strain CJ018CCUA]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTATTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTCGCAGGATTTATGAGAGATCATTTAAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCTGATGAGAAAAGTATTGCAAAAGCTTGGGAAGCAGC
CATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAAGTTTTAAATCTAGGTATTAGCATAATAAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PN97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707