Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GPICK_RS15060 Genome accession   NZ_CP009788
Coordinates   3312362..3313714 (+) Length   450 a.a.
NCBI ID   WP_039744571.1    Uniprot ID   A0A0B5BH49
Organism   Geobacter pickeringii strain G13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3307362..3318714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPICK_RS15040 (GPICK_15040) - 3308130..3308468 (-) 339 WP_039744564.1 hypothetical protein -
  GPICK_RS15045 (GPICK_15045) - 3308579..3309163 (+) 585 WP_039744565.1 HEAT repeat domain-containing protein -
  GPICK_RS15050 (GPICK_15050) - 3309167..3310534 (-) 1368 WP_039744567.1 HD-GYP domain-containing protein -
  GPICK_RS15055 (GPICK_15055) - 3310527..3312206 (-) 1680 WP_052263459.1 HEAT repeat domain-containing protein -
  GPICK_RS15060 (GPICK_15060) radA 3312362..3313714 (+) 1353 WP_039744571.1 DNA repair protein RadA Machinery gene
  GPICK_RS15065 (GPICK_15065) dksA 3313811..3314167 (+) 357 WP_039744573.1 RNA polymerase-binding protein DksA -
  GPICK_RS15070 (GPICK_15070) - 3314219..3316012 (+) 1794 WP_039744576.1 ATP-binding protein -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 47313.62 Da        Isoelectric Point: 6.6916

>NTDB_id=132224 GPICK_RS15060 WP_039744571.1 3312362..3313714(+) (radA) [Geobacter pickeringii strain G13]
MKTTTIYVCQGCGYHSPKWLGKCPDCGAWNSFTEEVRGREKGGRLAPAAGVKAVPLCEVAGETEERLSCGISEFDRVLGG
GLVAGSLVLIGGDPGIGKSTILLQVMNHLAESAGPALYVSGEESARQTRLRAERLDIRAPKLLVLAETSLETILGQIAEL
SPRAVVIDSIQTMFTAGLESAPGSVSQVRECAGKLMVAAKRSGIPTFIVGHVTKDGALAGPRVLEHMVDTVLYFEGDQGH
AFRILRAVKNRFGSTNEIGVFEMKEGGLREVANPSALFLSERPVGVSGSAVVTTIEGSRPLLVELQALVTPSSLGVPRRT
TLGVDHNRLALLVAVLDKKVGLHLSGSDIFLNAAGGARLNEPAADLGMVTALASSHLDKVIDPQTVIIGEVGLAGEVRAI
TQPETRVREAAKLGFTRAVIPAGSLTQVSPLAGMEVIGVRSVEEALERLL

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=132224 GPICK_RS15060 WP_039744571.1 3312362..3313714(+) (radA) [Geobacter pickeringii strain G13]
ATGAAAACTACGACTATTTACGTCTGCCAGGGATGCGGCTACCACTCTCCCAAGTGGCTCGGCAAGTGCCCCGACTGCGG
CGCCTGGAACAGCTTCACCGAAGAGGTGAGGGGGCGGGAGAAGGGGGGACGTCTCGCCCCTGCCGCCGGAGTGAAGGCGG
TACCGCTCTGCGAGGTGGCGGGGGAGACTGAGGAGCGGCTCTCCTGCGGCATCTCCGAATTCGACCGGGTCCTCGGCGGC
GGGCTCGTGGCCGGCTCCCTGGTGTTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACCATCCTCTTGCAAGTCATGAA
CCATCTCGCGGAAAGCGCAGGGCCGGCCCTCTACGTCTCGGGAGAGGAGTCGGCCCGTCAGACGCGGCTCCGCGCCGAAC
GGCTCGACATCAGGGCGCCGAAACTCCTTGTACTGGCCGAAACCTCACTGGAGACCATCCTCGGCCAGATTGCGGAACTC
TCCCCCCGGGCCGTGGTCATCGACTCCATCCAGACGATGTTCACCGCCGGCCTCGAATCGGCCCCCGGCAGCGTCAGCCA
GGTCCGGGAGTGCGCCGGCAAGCTGATGGTGGCGGCGAAGCGGAGCGGAATCCCCACCTTCATCGTCGGTCACGTGACCA
AGGACGGGGCACTGGCGGGGCCGCGGGTCCTGGAGCACATGGTCGACACCGTCCTCTACTTCGAGGGGGACCAGGGGCAC
GCCTTCCGGATCCTGCGGGCGGTGAAGAACCGCTTCGGCTCCACCAACGAGATCGGCGTCTTCGAGATGAAGGAAGGGGG
GCTCCGCGAGGTGGCGAATCCCTCGGCCCTTTTCCTCTCCGAGCGCCCCGTGGGGGTTTCCGGCTCCGCCGTCGTCACCA
CCATCGAGGGAAGCCGTCCTCTCCTCGTGGAGTTGCAGGCTCTCGTTACCCCCTCGTCCCTCGGCGTGCCGCGGCGCACC
ACCCTCGGCGTCGACCACAACCGCCTCGCGCTCCTGGTGGCGGTACTCGACAAGAAGGTAGGGCTCCACCTTTCCGGCAG
CGACATCTTCCTCAACGCCGCCGGCGGCGCCCGGCTGAACGAGCCGGCGGCTGACCTCGGCATGGTGACCGCCCTGGCGT
CGAGCCATCTCGACAAGGTCATCGACCCGCAGACGGTCATCATCGGCGAAGTGGGGCTCGCCGGTGAAGTCCGGGCCATC
ACCCAGCCGGAGACCAGGGTCCGCGAGGCGGCCAAGCTCGGCTTCACCCGCGCCGTCATCCCCGCAGGGAGCCTCACGCA
GGTGTCCCCCCTCGCCGGGATGGAAGTGATCGGGGTGCGCTCGGTGGAGGAGGCGCTGGAACGGCTCCTCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-216)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B5BH49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

56.889

100

0.569
  radA Streptococcus mitis SK321

53.437

100

0.536
  radA Streptococcus mitis NCTC 12261

53.437

100

0.536
  radA Streptococcus pneumoniae Rx1

53.215

100

0.533
  radA Streptococcus pneumoniae D39

53.215

100

0.533
  radA Streptococcus pneumoniae R6

53.215

100

0.533
  radA Streptococcus pneumoniae TIGR4

53.215

100

0.533

Multiple sequence alignment