Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AEI22_RS04820 Genome accession   NZ_CP012220
Coordinates   916667..917218 (+) Length   183 a.a.
NCBI ID   WP_002921394.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ090CC1332     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 911667..922218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI22_RS04785 (AEI22_04775) - 911856..912282 (+) 427 Protein_924 GNAT family N-acetyltransferase -
  AEI22_RS04790 (AEI22_04780) - 912346..912966 (+) 621 WP_002858394.1 NAD(P)H-dependent oxidoreductase -
  AEI22_RS04795 (AEI22_04785) - 912966..913571 (+) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  AEI22_RS04800 (AEI22_04790) pgsA 913696..914232 (+) 537 WP_052793045.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AEI22_RS04805 (AEI22_04795) rseP 914229..915335 (+) 1107 WP_057095875.1 RIP metalloprotease RseP -
  AEI22_RS04810 (AEI22_04800) - 915328..916194 (+) 867 WP_057095876.1 VirK family antimicrobial peptide resistance protein -
  AEI22_RS04815 (AEI22_04805) rpsF 916281..916658 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  AEI22_RS04820 (AEI22_04810) ssb 916667..917218 (+) 552 WP_002921394.1 single-stranded DNA-binding protein Machinery gene
  AEI22_RS04825 (AEI22_04815) rpsR 917229..917489 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  AEI22_RS04830 (AEI22_04820) lon 917550..919925 (-) 2376 WP_052779714.1 endopeptidase La -
  AEI22_RS04835 (AEI22_04825) - 919942..920589 (-) 648 WP_002936691.1 outer membrane protein assembly factor BamD -
  AEI22_RS04840 (AEI22_04830) fliW 920750..921139 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  AEI22_RS04845 (AEI22_04835) proC 921139..921870 (+) 732 WP_052779713.1 pyrroline-5-carboxylate reductase Machinery gene
  AEI22_RS04850 (AEI22_04840) ctsT 921867..922169 (+) 303 WP_002936694.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20740.63 Da        Isoelectric Point: 5.0431

>NTDB_id=132175 AEI22_RS04820 WP_002921394.1 916667..917218(+) (ssb) [Campylobacter jejuni strain CJ090CC1332]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=132175 AEI22_RS04820 WP_002921394.1 916667..917218(+) (ssb) [Campylobacter jejuni strain CJ090CC1332]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393