Detailed information NTG0132024

Bioinformatically predicted

Overview

• Name: cqsA
• Type: Regulator
• Locus tag: FORC6_RS20365
• Genome accession: NZ_CP009766
• Coordinates: 1000294..1001475 (+)
• Length: 393 a.a.
• NCBI ID: WP_060658906.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain FORC_006
• Function: induction of competence (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	996851..1005527	1000294..1001475	within	0

Gene organization within MGE regions

Location: 996851..1005527

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC6_RS20350 (FORC6_3946)	-	996851..997606 (-)	756	WP_228750866.1	radical SAM protein	-
FORC6_RS20355	-	998077..998244 (-)	168	Protein_885	AlpA family transcriptional regulator	-
FORC6_RS25210	-	998393..998706 (+)	314	Protein_886	JAB domain-containing protein	-
FORC6_RS20360 (FORC6_3948)	ylqF	998996..999940 (+)	945	WP_025612059.1	ribosome biogenesis GTPase YlqF	-
FORC6_RS20365 (FORC6_3949)	cqsA	1000294..1001475 (+)	1182	WP_060658906.1	alpha-hydroxyketone-type quorum-sensing autoinducer synthase	Regulator
FORC6_RS20370 (FORC6_3950)	cqsS	1001553..1003601 (-)	2049	WP_060658907.1	response regulator	Regulator
FORC6_RS20375	-	1003921..1004214 (+)	294	Protein_890	HAD family phosphatase	-
FORC6_RS20380	-	1004486..1005527 (+)	1042	Protein_891	IS481 family transposase	-

Sequence

Protein

• Length: 393 a.a.
• Molecular weight: 43850.17 Da
• Isoelectric Point: 6.4374

>NTDB_id=132024 FORC6_RS20365 WP_060658906.1 1000294..1001475(+) (cqsA) [Vibrio parahaemolyticus strain FORC_006]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNVPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTYGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide

• Length: 1182 bp

>NTDB_id=132024 FORC6_RS20365 WP_060658906.1 1000294..1001475(+) (cqsA) [Vibrio parahaemolyticus strain FORC_006]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAACACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCTGTGGTTATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGATGCAATTTCTGAACGAGATGACAATGTCGTGATGTCG
GCAATCTTCTTACAAGATGACCAATCAAAACCCGCCTTTGAGCACCAGCTAGCGACGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCGCCAAACGTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGCGCGCAGATTCATCCTTTCATGCACAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCTGTGTATAGCACGATTGGTACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTTGATTGTGGCTTAGTGGTAGATGAATCCCATTCATTAGGCACAT
ACGGACCAAAGGGTTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCGAAA
ACGTTCGCCTACCGCGCTGGTGCGATTTTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCACAAGAAGTCGTGCGTTTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCGATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGCGATTTCCTTGAAGAAAGAGACGTTTTCGGTGC
GGTGTTTTGCCGACCTGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

• Aminotransferase class I and II (Aminotran_1_2) (45-379)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cqsA	Vibrio cholerae strain A1552	58.398	98.473	0.575