Detailed information NTG0131993

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FORC6_RS02740
• Genome accession: NZ_CP009765
• Coordinates: 560792..561781 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain FORC_006
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 555792..566781

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC6_RS02705 (FORC6_0458)	ftsB	555800..556081 (+)	282	WP_005455577.1	cell division protein FtsB	-
FORC6_RS02710 (FORC6_0459)	ispD	556083..556787 (+)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FORC6_RS02715 (FORC6_0460)	ispF	556805..557281 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FORC6_RS02720 (FORC6_0461)	truD	557328..558371 (+)	1044	WP_025500980.1	tRNA pseudouridine(13) synthase TruD	-
FORC6_RS02725 (FORC6_0462)	surE	558371..559147 (+)	777	WP_060657281.1	5'/3'-nucleotidase SurE	-
FORC6_RS02730 (FORC6_0463)	-	559147..559773 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FORC6_RS02735 (FORC6_0464)	-	559788..560711 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
FORC6_RS02740 (FORC6_0465)	rpoS	560792..561781 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
FORC6_RS02745 (FORC6_0466)	mutS	561861..564422 (-)	2562	WP_060657283.1	DNA mismatch repair protein MutS	-
FORC6_RS02750 (FORC6_0467)	pncC	564507..564989 (+)	483	WP_060657285.1	nicotinamide-nucleotide amidase	-
FORC6_RS02755 (FORC6_0468)	recA	565190..566233 (+)	1044	WP_060657287.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=131993 FORC6_RS02740 WP_005478537.1 560792..561781(+) (rpoS) [Vibrio parahaemolyticus strain FORC_006]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=131993 FORC6_RS02740 WP_005478537.1 560792..561781(+) (rpoS) [Vibrio parahaemolyticus strain FORC_006]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851