Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   AEI26_RS02975 Genome accession   NZ_CP012212
Coordinates   564804..565187 (+) Length   127 a.a.
NCBI ID   WP_044794336.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ017CCUA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 559804..570187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI26_RS02955 (AEI26_02940) - 559883..561817 (-) 1935 WP_070298733.1 ribonuclease R family protein -
  AEI26_RS02960 (AEI26_02945) ilvC 561936..562958 (+) 1023 WP_002871355.1 ketol-acid reductoisomerase -
  AEI26_RS02965 (AEI26_02950) - 562962..564044 (+) 1083 WP_070298734.1 divergent polysaccharide deacetylase family protein -
  AEI26_RS02970 (AEI26_02955) dprA 564034..564807 (+) 774 WP_044794335.1 DNA-processing protein DprA Machinery gene
  AEI26_RS02975 (AEI26_02960) dprB 564804..565187 (+) 384 WP_044794336.1 Holliday junction resolvase RuvX Machinery gene
  AEI26_RS02980 (AEI26_02965) - 565216..566055 (+) 840 WP_079396361.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  AEI26_RS02985 (AEI26_02970) msrA 566231..566728 (-) 498 WP_044794338.1 peptide-methionine (S)-S-oxide reductase MsrA -
  AEI26_RS02990 (AEI26_02975) ppa 566769..567287 (-) 519 WP_002871349.1 inorganic diphosphatase -
  AEI26_RS02995 (AEI26_02980) adk 567297..567875 (-) 579 WP_002855137.1 adenylate kinase -
  AEI26_RS03000 (AEI26_02985) aspS 567872..569623 (-) 1752 WP_070298753.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14072.60 Da        Isoelectric Point: 9.5433

>NTDB_id=131891 AEI26_RS02975 WP_044794336.1 564804..565187(+) (dprB) [Campylobacter jejuni strain CJ017CCUA]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGIANTRKKDGKLDSLAAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=131891 AEI26_RS02975 WP_044794336.1 564804..565187(+) (dprB) [Campylobacter jejuni strain CJ017CCUA]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATCGCTTTACCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATTAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TTATTGTAGGCATTCCTAAGGGTGGGTCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATACGGCATAGCAAATACACGTAA
AAAAGATGGTAAATTAGACTCTTTGGCTGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.094

100

0.441

Multiple sequence alignment