Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AEI01_RS05025 Genome accession   NZ_CP012211
Coordinates   956638..957189 (+) Length   183 a.a.
NCBI ID   WP_002866097.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ031CC45     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 951638..962189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI01_RS05000 (AEI01_04980) rseP 951810..952916 (+) 1107 WP_115786704.1 RIP metalloprotease RseP -
  AEI01_RS05005 (AEI01_04985) - 952909..953769 (+) 861 WP_032603534.1 VirK family antimicrobial peptide resistance protein -
  AEI01_RS05010 (AEI01_04990) - 953762..954763 (-) 1002 WP_002866095.1 sugar phosphate isomerase/epimerase family protein -
  AEI01_RS05015 (AEI01_04995) - 954760..956034 (-) 1275 WP_002866096.1 MFS transporter -
  AEI01_RS05020 (AEI01_05000) rpsF 956252..956629 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  AEI01_RS05025 (AEI01_05005) ssb 956638..957189 (+) 552 WP_002866097.1 single-stranded DNA-binding protein Machinery gene
  AEI01_RS05030 (AEI01_05010) rpsR 957200..957460 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  AEI01_RS05035 (AEI01_05015) lon 957521..959896 (-) 2376 WP_002866098.1 endopeptidase La -
  AEI01_RS05040 (AEI01_05020) - 959913..960560 (-) 648 WP_002877748.1 outer membrane protein assembly factor BamD -
  AEI01_RS05045 (AEI01_05025) fliW 960721..961110 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  AEI01_RS05050 (AEI01_05030) proC 961110..961841 (+) 732 WP_115786705.1 pyrroline-5-carboxylate reductase Machinery gene
  AEI01_RS05055 (AEI01_05035) ctsT 961838..962140 (+) 303 WP_002866102.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20725.67 Da        Isoelectric Point: 5.0430

>NTDB_id=131852 AEI01_RS05025 WP_002866097.1 956638..957189(+) (ssb) [Campylobacter jejuni strain CJ031CC45]
MFNKVVLVGNLTRDIEMRYAQSGSAIGTSAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGGNSNAPQQCGIGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=131852 AEI01_RS05025 WP_002866097.1 956638..957189(+) (ssb) [Campylobacter jejuni strain CJ031CC45]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AACTTCTGCTATCGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAGGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCGGCAA
TTCCAATGCTCCACAACAATGTGGAATTGGTAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.158

100

0.372

Multiple sequence alignment