Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   NJ69_RS03665 Genome accession   NZ_CP009747
Coordinates   826686..828908 (+) Length   740 a.a.
NCBI ID   WP_039576282.1    Uniprot ID   -
Organism   Pseudomonas parafulva strain CRS01-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 821686..833908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NJ69_RS03650 (NJ69_03650) - 823554..824177 (+) 624 WP_039576279.1 glutathione S-transferase -
  NJ69_RS03655 (NJ69_03655) - 824324..825256 (+) 933 WP_039576280.1 ABC transporter ATP-binding protein -
  NJ69_RS03660 (NJ69_03660) - 825253..826032 (+) 780 WP_029612976.1 ABC transporter permease -
  NJ69_RS22270 - 825916..826542 (-) 627 WP_116887815.1 DUF2062 domain-containing protein -
  NJ69_RS03665 (NJ69_03665) comA 826686..828908 (+) 2223 WP_039576282.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NJ69_RS03670 (NJ69_03670) exbB 829022..829657 (+) 636 WP_029612977.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NJ69_RS03675 (NJ69_03675) - 829654..830088 (+) 435 WP_039576284.1 biopolymer transporter ExbD -
  NJ69_RS03680 (NJ69_03680) lpxK 830088..831083 (+) 996 WP_029612979.1 tetraacyldisaccharide 4'-kinase -
  NJ69_RS03685 (NJ69_03685) - 831125..831310 (+) 186 WP_029612980.1 Trm112 family protein -
  NJ69_RS03690 (NJ69_03690) kdsB 831307..832071 (+) 765 WP_029612981.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NJ69_RS03695 (NJ69_03695) - 832071..832535 (+) 465 WP_029612983.1 low molecular weight protein-tyrosine-phosphatase -
  NJ69_RS03700 (NJ69_03700) murB 832532..833551 (+) 1020 WP_039576286.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 80679.54 Da        Isoelectric Point: 11.0910

>NTDB_id=131817 NJ69_RS03665 WP_039576282.1 826686..828908(+) (comA) [Pseudomonas parafulva strain CRS01-1]
MRTGMFALVLGLLSLGLWPALPSVGWLFLLSLLALLCLRSRAWPLGWLLLGVCWACWSAQQALDDRLASGLDGRTLWLEG
RVVGLPAYSGGTVRFDLEDAQSRRGALPRHVQLSWFGGPTIRAGERWRLAVTLRQPSGLLNPHGADREAMFLARRIGATG
TVKAGERLEPVRGGWRDRLRQRLLAVDAHGRESVLAALLLGDGSGLTRTDWQTLQATGTVHLLVISGQHIGLLAGLIYGV
IAGLARLGVWPGRWPWLPWACGLAMASALGYGALAGFQVPVQRACLMLATVLLWRLRFRHLGAFFPLLLALTGVLLLEPL
ASLLPGFWLSFTAVATLIYCFSGRLGRWRPWQAWSRAQWVIAIGLLPALLALGLPISLSAPLVNLLAVPWISLAVLPLAL
LGTALLPLTGVGESLLWAAGGLIDIMFRTLGLLAEWQPAWLPRPLPLWRWSLVCAGALLLLSPRGAPLKGLGAVMLLALW
TPRDHIPHGQAEIWQLDVGQGLAVLLRTRHHSLLYDAGPATRFSDLGESVVLPTLRKLGVDQLNVMLISHAHADHAGGAA
AVYRGLPIARVLAGEPLALPASLQAQACASGERWEWDGVHFSLWHWPQGKSSNDRSCVLMVEAQGERLLLAGDMETAAER
VWLKENVSPRIDWLQSPHHGSRSSSTEPFMRATAPRGVLISRGRHNMFGHPHPQVIERYRRHGLTVHDTALHGALRLSLG
AHGDVEGLGLQRRFWRGPPS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=131817 NJ69_RS03665 WP_039576282.1 826686..828908(+) (comA) [Pseudomonas parafulva strain CRS01-1]
ATGCGCACAGGGATGTTTGCGCTGGTGCTCGGGTTGTTGAGCCTGGGTTTGTGGCCTGCCTTGCCATCGGTCGGGTGGCT
TTTCCTTCTGTCGTTGTTGGCGCTGTTGTGCCTGCGCAGCCGCGCCTGGCCGCTGGGCTGGCTGTTGCTGGGCGTGTGTT
GGGCCTGCTGGTCGGCGCAGCAGGCTCTGGACGATCGCCTGGCCAGCGGTCTGGATGGCCGCACCTTGTGGTTGGAGGGC
AGGGTGGTGGGGCTTCCGGCGTACTCCGGCGGCACTGTGCGCTTCGACCTTGAGGATGCGCAGTCGCGGCGTGGTGCGCT
GCCTCGGCACGTCCAGTTGAGTTGGTTCGGCGGCCCGACGATCAGGGCGGGTGAACGCTGGCGACTGGCGGTGACACTCA
GGCAGCCGAGCGGTCTGCTCAACCCCCATGGTGCGGATCGCGAAGCGATGTTTCTGGCTCGTCGCATTGGTGCCACCGGA
ACAGTCAAGGCCGGCGAGAGACTGGAGCCGGTCCGAGGCGGATGGCGGGATCGCTTGCGTCAGCGGCTGCTGGCAGTGGA
TGCGCACGGACGTGAATCGGTGCTGGCGGCTTTGCTGCTGGGGGATGGCTCGGGCCTGACGCGCACGGACTGGCAAACCT
TGCAGGCCACTGGCACCGTGCATTTGCTGGTTATTTCCGGACAACACATCGGTCTGCTGGCAGGGCTGATTTACGGCGTC
ATTGCCGGCTTGGCTCGTCTAGGCGTGTGGCCTGGGCGCTGGCCGTGGCTACCTTGGGCGTGTGGTCTGGCGATGGCTTC
GGCGTTGGGCTACGGGGCGCTGGCTGGATTCCAAGTGCCCGTGCAGCGTGCCTGCCTGATGCTGGCTACGGTGCTGCTCT
GGCGTCTGCGCTTTCGCCACTTGGGCGCCTTCTTTCCGCTATTGCTGGCGCTGACCGGTGTGCTGCTGCTCGAGCCACTG
GCAAGCCTGCTGCCAGGTTTCTGGTTGTCCTTCACTGCCGTGGCCACCTTGATCTACTGTTTCAGTGGGCGTCTGGGCCG
CTGGCGTCCTTGGCAAGCCTGGAGTCGCGCGCAATGGGTGATCGCGATCGGTTTGCTGCCTGCATTGCTGGCGCTGGGCC
TGCCGATCAGCCTCAGCGCACCGTTGGTCAATCTGCTGGCCGTGCCCTGGATCAGCCTGGCTGTTTTACCTCTGGCGTTG
CTCGGCACGGCCTTGTTACCGCTGACGGGCGTCGGCGAGAGTTTGTTATGGGCGGCCGGCGGGTTGATCGACATCATGTT
CCGCACGCTCGGCCTGTTGGCCGAATGGCAACCGGCGTGGCTGCCTCGTCCCTTGCCGCTGTGGCGTTGGAGCCTGGTGT
GTGCCGGTGCGCTGCTGCTGCTGTCACCGCGCGGCGCGCCGCTCAAGGGTCTGGGGGCGGTGATGCTCCTGGCGCTATGG
ACGCCCCGCGATCACATCCCGCATGGACAGGCAGAGATCTGGCAGTTGGACGTCGGCCAAGGCCTGGCGGTACTGCTGCG
TACGCGGCATCACAGCCTGCTCTACGACGCCGGGCCAGCCACCCGTTTCAGCGATCTTGGGGAAAGCGTGGTACTGCCAA
CGTTGCGCAAGCTCGGTGTCGATCAGCTCAATGTGATGTTGATCAGTCATGCCCATGCCGACCACGCGGGCGGTGCTGCG
GCGGTGTATCGAGGACTGCCGATCGCGCGCGTGCTGGCAGGCGAGCCGCTGGCGCTGCCAGCCTCGCTGCAGGCGCAAGC
GTGCGCCAGCGGCGAGCGCTGGGAATGGGACGGCGTGCATTTCTCGCTGTGGCACTGGCCGCAGGGCAAGAGCAGCAACG
ACCGCTCCTGTGTATTGATGGTCGAGGCTCAGGGCGAGCGCTTACTGCTCGCTGGCGATATGGAGACGGCCGCCGAGCGC
GTCTGGCTGAAAGAAAACGTATCGCCACGCATCGACTGGCTGCAGTCACCGCATCACGGCAGCCGCAGTTCCTCCACCGA
GCCGTTCATGCGCGCAACGGCGCCACGTGGCGTATTGATTTCCCGAGGGCGACACAACATGTTCGGTCACCCTCATCCCC
AAGTGATCGAACGCTATCGACGGCATGGTCTGACCGTGCATGATACGGCTCTGCATGGCGCGTTGCGCCTGTCGCTGGGT
GCCCATGGCGACGTCGAGGGGCTTGGTCTGCAGAGGCGTTTCTGGCGCGGGCCACCGTCCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-461)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-666)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.61

97.027

0.578

Multiple sequence alignment