Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BWEI_RS20220 Genome accession   NZ_CP009746
Coordinates   4048355..4049482 (-) Length   375 a.a.
NCBI ID   WP_002034987.1    Uniprot ID   -
Organism   Bacillus mycoides strain WSBC10204     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4043355..4054482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWEI_RS20210 (bwei_4277) gyrA 4043834..4046305 (-) 2472 WP_002034984.1 DNA gyrase subunit A -
  BWEI_RS20215 (bwei_4278) gyrB 4046394..4048316 (-) 1923 WP_002034986.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  BWEI_RS20220 (bwei_4279) recF 4048355..4049482 (-) 1128 WP_002034987.1 DNA replication/repair protein RecF Machinery gene
  BWEI_RS20225 (bwei_4280) yaaA 4049495..4049707 (-) 213 WP_002016484.1 S4 domain-containing protein YaaA -
  BWEI_RS20230 (bwei_4281) dnaN 4049836..4050981 (-) 1146 WP_002034988.1 DNA polymerase III subunit beta -
  BWEI_RS20235 (bwei_4282) dnaA 4051164..4052504 (-) 1341 WP_002016481.1 chromosomal replication initiator protein DnaA -
  BWEI_RS20240 (bwei_4284) rpmH 4053068..4053202 (+) 135 WP_000831901.1 50S ribosomal protein L34 -
  BWEI_RS20245 (bwei_4285) rnpA 4053279..4053626 (+) 348 WP_002089963.1 ribonuclease P protein component -
  BWEI_RS20250 (bwei_4286) spoIIIJ 4053679..4054446 (+) 768 WP_002016477.1 YidC family membrane integrase SpoIIIJ -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43514.79 Da        Isoelectric Point: 6.8418

>NTDB_id=131800 BWEI_RS20220 WP_002034987.1 4048355..4049482(-) (recF) [Bacillus mycoides strain WSBC10204]
MFITEIQLKNYRNYEHLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDYGNIKGRLQRRNSS
ISLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLLGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVEGIEHETLKEAKTIHVTNGTVDCEIDRK

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=131800 BWEI_RS20220 WP_002034987.1 4048355..4049482(-) (recF) [Bacillus mycoides strain WSBC10204]
TTGTTTATTACAGAAATACAATTAAAAAACTATCGCAATTATGAGCATTTAGAGCTTTCCTTTGAGGATAAAGTCAATGT
AATTATTGGTGAAAATGCGCAAGGGAAAACGAATCTGATGGAAGCTATTTATGTATTGGCGATGGCGAAATCTCATAGAA
CTTCGAACGATCGTGAACTCATTCGTTGGGATGAGGATTATGGTAATATAAAAGGTAGATTACAAAGGCGAAATAGTTCA
ATATCCTTAGAATTAAACATTTCAAAAAAAGGTAAAAAGGCAAAGTTAAATCAGTTAGAACAACAAAAATTGAGCCAGTA
TATTGGTGAAATGAATGTTGTTATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTACGAAGACGCT
TTTTGGATATGGAACTTGGACAAATAGCTCCGGTCTATTTGTATGAATTAAGTCAATATCAAAAGGTACTCACGCAACGA
AATCATTTACTTAAGAAGATGCAAGGGAATAGTAAAAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTGCAAAAATTTTGCGAAAACGTTTTGAGTTTTTGCATTTACTACAAGAATGGGCTGCTCCAATTCATCGCGGAA
TTAGCAGGGGATTAGAGGAGTTAGAAATCGTTTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTTCGGGGTACAACTTTGCTTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCACAAGGACAACAACGAACAACCGCACTAT
CCCTAAAATTGGCTGAAATTGAATTGATATACTCAGAGGTTAAGGAATATCCAATTCTTTTACTAGATGATGTGTTATCA
GAATTAGATGATTATCGTCAATCGCATCTGCTAAATACAATTCAAGGAAAAGTACAAACCTTTGTGACAACGACGAGTGT
CGAGGGAATTGAACACGAAACATTGAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGACA
GAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

67.12

98.133

0.659

Multiple sequence alignment