Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BWEI_RS17610 Genome accession   NZ_CP009746
Coordinates   3531878..3532201 (+) Length   107 a.a.
NCBI ID   WP_002030429.1    Uniprot ID   A0A084J505
Organism   Bacillus mycoides strain WSBC10204     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3526878..3537201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWEI_RS17595 (bwei_3724) - 3527396..3528763 (-) 1368 WP_033708895.1 aldehyde dehydrogenase -
  BWEI_RS17600 (bwei_3725) inhA1 3528934..3531321 (-) 2388 WP_002030427.1 M6 family metalloprotease immune inhibitor InhA1 -
  BWEI_RS17605 (bwei_3726) - 3531664..3531798 (+) 135 WP_002011474.1 anti-repressor SinI family protein -
  BWEI_RS17610 (bwei_3727) sinR 3531878..3532201 (+) 324 WP_002030429.1 helix-turn-helix domain-containing protein Regulator
  BWEI_RS17615 (bwei_3728) calY 3532284..3532877 (-) 594 WP_002030430.1 biofilm matrix protein CalY -
  BWEI_RS17620 (bwei_3729) - 3533320..3534153 (-) 834 WP_033708897.1 DUF4047 domain-containing protein -
  BWEI_RS17625 (bwei_3730) - 3534315..3534902 (-) 588 WP_002030432.1 CalY family protein -
  BWEI_RS17630 (bwei_3731) sipW 3534969..3535538 (-) 570 WP_002030434.1 signal peptidase I SipW -
  BWEI_RS17635 (bwei_3732) - 3535736..3537022 (-) 1287 WP_033708898.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12274.04 Da        Isoelectric Point: 7.2050

>NTDB_id=131789 BWEI_RS17610 WP_002030429.1 3531878..3532201(+) (sinR) [Bacillus mycoides strain WSBC10204]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTTEGHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQQ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=131789 BWEI_RS17610 WP_002030429.1 3531878..3532201(+) (sinR) [Bacillus mycoides strain WSBC10204]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGCATTTCATTAACAGAACTCGCCGAAAAAGCTGGTGTCGC
TAAATCTTACATTAGTTCTATAGAACGGAATTTACAAAAAAACCCTTCTATTCAGTTTCTTGAAAAAATTGCAGCTGTTC
TACAAATTCCAGTTGATACTTTACTTCACGATGAAACAACAACGGAGGGTCATCTAGACTCCGAATGGACACAGCTCGTT
AAAGATGCGATGAGCTCTGGTGTCTCAAAAGAACAGTTTCGTGAATTTCTCGAATTTACACAATGGAAGAAAAATCAACA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A084J505

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment