Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BWEI_RS04555 Genome accession   NZ_CP009746
Coordinates   840914..841348 (+) Length   144 a.a.
NCBI ID   WP_002033818.1    Uniprot ID   -
Organism   Bacillus mycoides strain WSBC10204     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 835914..846348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWEI_RS04535 (bwei_0943) - 836692..837855 (-) 1164 WP_002033816.1 aminotransferase A -
  BWEI_RS04540 (bwei_0944) - 838090..838290 (-) 201 WP_000929276.1 hypothetical protein -
  BWEI_RS04545 (bwei_0945) - 838600..839874 (+) 1275 WP_002014814.1 sensor histidine kinase -
  BWEI_RS04550 (bwei_0946) - 839934..840677 (-) 744 WP_002033817.1 DUF3967 domain-containing protein -
  BWEI_RS04555 (bwei_0947) nucA/comI 840914..841348 (+) 435 WP_002033818.1 DNA-entry nuclease Machinery gene
  BWEI_RS04560 (bwei_0948) comJ 841388..841777 (+) 390 WP_033709400.1 competence protein ComJ -
  BWEI_RS04565 (bwei_0949) metE 841818..844106 (-) 2289 WP_002014819.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  BWEI_RS04570 (bwei_0950) - 844647..845204 (-) 558 WP_002128898.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16182.53 Da        Isoelectric Point: 8.4331

>NTDB_id=131777 BWEI_RS04555 WP_002033818.1 840914..841348(+) (nucA/comI) [Bacillus mycoides strain WSBC10204]
MKQFKGTIISIIAILSLLVAVYEVLVPEETSTKKTTTYDQILEFPKERYPETGKHITDAIKEGHSEMCTIDRNGAADRRK
LSLAPYPTKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=131777 BWEI_RS04555 WP_002033818.1 840914..841348(+) (nucA/comI) [Bacillus mycoides strain WSBC10204]
ATGAAGCAATTTAAAGGTACTATCATTTCAATTATTGCAATTCTTTCTCTTTTGGTAGCGGTATATGAAGTACTTGTGCC
AGAGGAGACAAGTACTAAAAAAACAACTACGTATGATCAAATTCTAGAGTTCCCGAAAGAACGATATCCAGAGACCGGGA
AACATATAACGGATGCTATAAAAGAAGGACATTCGGAAATGTGTACAATTGATCGTAATGGTGCAGCGGATAGAAGGAAA
TTATCGTTAGCGCCATATCCGACGAAGAAAGGTTATGATCGTGATGAATGGCCGATGGCGATGTGTAAGGAAGGCGGAAA
AGGAGCTCATATTGAATATATAAGTCCAGCAGATAACCGCGGTGCAGGTTCTTGGGTAGGGAATAAGCTAGACAAATATC
CAGATGGTACGCGTGTGAAATTTGAAGTGAAATAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(47-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.027

78.472

0.542

Multiple sequence alignment