Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AEI02_RS05010 Genome accession   NZ_CP012206
Coordinates   961172..961723 (+) Length   183 a.a.
NCBI ID   WP_002877747.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ067CC45     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 956172..966723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI02_RS04975 (AEI02_04975) - 956362..956787 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  AEI02_RS04980 (AEI02_04980) - 956851..957471 (+) 621 WP_002858394.1 NAD(P)H-dependent oxidoreductase -
  AEI02_RS04985 (AEI02_04985) - 957471..958076 (+) 606 WP_002853752.1 NAD(P)H-dependent oxidoreductase -
  AEI02_RS04990 (AEI02_04990) pgsA 958201..958737 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AEI02_RS04995 (AEI02_04995) rseP 958734..959840 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  AEI02_RS05000 (AEI02_05000) - 959833..960699 (+) 867 WP_087684637.1 VirK family antimicrobial peptide resistance protein -
  AEI02_RS05005 (AEI02_05005) rpsF 960786..961163 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  AEI02_RS05010 (AEI02_05010) ssb 961172..961723 (+) 552 WP_002877747.1 single-stranded DNA-binding protein Machinery gene
  AEI02_RS05015 (AEI02_05015) rpsR 961734..961994 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  AEI02_RS05020 (AEI02_05020) lon 962055..964430 (-) 2376 WP_038402136.1 endopeptidase La -
  AEI02_RS05025 (AEI02_05025) - 964447..965094 (-) 648 WP_012006727.1 outer membrane protein assembly factor BamD -
  AEI02_RS05030 (AEI02_05030) fliW 965255..965644 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  AEI02_RS05035 (AEI02_05035) proC 965644..966375 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  AEI02_RS05040 (AEI02_05040) ctsT 966372..966674 (+) 303 WP_002877750.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20770.66 Da        Isoelectric Point: 5.0431

>NTDB_id=131758 AEI02_RS05010 WP_002877747.1 961172..961723(+) (ssb) [Campylobacter jejuni strain CJ067CC45]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKTNPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=131758 AEI02_RS05010 WP_002877747.1 961172..961723(+) (ssb) [Campylobacter jejuni strain CJ067CC45]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
GGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAACAAACCCCGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372