Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   AEI05_RS06365 Genome accession   NZ_CP012205
Coordinates   1209186..1210052 (-) Length   288 a.a.
NCBI ID   WP_002858085.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ510CC45     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1204186..1215052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI05_RS06345 (AEI05_06365) metF 1206039..1206887 (+) 849 WP_002859283.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  AEI05_RS06350 (AEI05_06370) - 1206909..1207100 (-) 192 WP_002852856.1 membrane protein -
  AEI05_RS06355 (AEI05_06375) atpB 1207097..1207777 (-) 681 WP_002858390.1 F0F1 ATP synthase subunit A -
  AEI05_RS06360 (AEI05_06380) radA 1207846..1209186 (-) 1341 WP_002854001.1 DNA repair protein RadA Machinery gene
  AEI05_RS06365 (AEI05_06385) pilA 1209186..1210052 (-) 867 WP_002858085.1 signal recognition particle-docking protein FtsY Machinery gene
  AEI05_RS06370 (AEI05_06390) - 1210052..1210609 (-) 558 WP_002866214.1 TlpA family protein disulfide reductase -
  AEI05_RS06375 (AEI05_06395) - 1210692..1211318 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  AEI05_RS06380 (AEI05_06400) rny 1211239..1212792 (+) 1554 WP_002853829.1 ribonuclease Y -
  AEI05_RS06385 (AEI05_06405) - 1212801..1213358 (+) 558 WP_002866215.1 DedA family protein -
  AEI05_RS06390 (AEI05_06410) - 1213358..1214617 (+) 1260 WP_052776009.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32022.00 Da        Isoelectric Point: 5.5179

>NTDB_id=131722 AEI05_RS06365 WP_002858085.1 1209186..1210052(-) (pilA) [Campylobacter jejuni strain CJ510CC45]
MFNFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=131722 AEI05_RS06365 WP_002858085.1 1209186..1210052(-) (pilA) [Campylobacter jejuni strain CJ510CC45]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGAGTTAAAGGAGAGAACAAAAAAATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAGCTTGCTTATTTATA
CAAAAACCAAAATCAAAAAGTGATTTTAGGGGCGTGTGATACTTTTAGAGCAGGTGCGATTGAGCAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCTCATGAGCT
TGAAAAAATTGTAAGAATTTCAAACAAAGCTTTAGAAGGCGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATTACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTACAAGAATTTAATGCAAGTGCTTACTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.584

100

0.437

Multiple sequence alignment