Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CJM1cam_RS05860 Genome accession   NZ_CP012149
Coordinates   1142529..1143023 (+) Length   164 a.a.
NCBI ID   WP_002860433.1    Uniprot ID   Q5HTR6
Organism   Campylobacter jejuni strain CJM1cam     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1137529..1148023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJM1cam_RS05845 (CJM1cam_1177) - 1138915..1140093 (-) 1179 WP_002858139.1 metal-dependent hydrolase -
  CJM1cam_RS05850 (CJM1cam_1178) gpsA 1140103..1140999 (-) 897 WP_075888380.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  CJM1cam_RS05855 (CJM1cam_1179) gatB 1140996..1142414 (-) 1419 WP_002868575.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  CJM1cam_RS05860 (CJM1cam_1180) luxS 1142529..1143023 (+) 495 WP_002860433.1 S-ribosylhomocysteine lyase Regulator
  CJM1cam_RS05865 (CJM1cam_1181) - 1143335..1144325 (+) 991 Protein_1128 isopenicillin N synthase family oxygenase -
  CJM1cam_RS05870 (CJM1cam_1182) - 1144336..1145106 (+) 771 WP_014517072.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  CJM1cam_RS05875 (CJM1cam_1183) metE 1145118..1147382 (+) 2265 WP_002877092.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18271.22 Da        Isoelectric Point: 6.3290

>NTDB_id=131669 CJM1cam_RS05860 WP_002860433.1 1142529..1143023(+) (luxS) [Campylobacter jejuni strain CJM1cam]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=131669 CJM1cam_RS05860 WP_002860433.1 1142529..1143023(+) (luxS) [Campylobacter jejuni strain CJM1cam]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTGTTTGATTTGCGTTTTTGTATACCAAATAAAGACATTATGAGCGAAAAAGGTACAC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATCTTAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCAAAAGCTTGGGAAGAAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5HTR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707

Multiple sequence alignment