Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | ADZ28_RS24895 | Genome accession | NZ_CP012127 |
| Coordinates | 2057500..2057946 (+) | Length | 148 a.a. |
| NCBI ID | WP_000187523.1 | Uniprot ID | P76362 |
| Organism | Escherichia coli strain DH1Ec169 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2052500..2062946
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ADZ28_RS10295 (ADZ28_10305) | agn43 | 2052731..2055850 (+) | 3120 | WP_000820410.1 | autotransporter adhesin Ag43 | - |
| ADZ28_RS10300 (ADZ28_10310) | yeeR | 2055971..2057503 (+) | 1533 | WP_001350525.1 | protein YeeR | - |
| ADZ28_RS24895 (ADZ28_10315) | radC | 2057500..2057946 (+) | 447 | WP_000187523.1 | RadC family protein | Machinery gene |
| ADZ28_RS10310 (ADZ28_10320) | yeeT | 2058009..2058230 (+) | 222 | WP_000692323.1 | DUF987 domain-containing protein | - |
| ADZ28_RS10315 (ADZ28_10325) | cbeA | 2058304..2058672 (+) | 369 | WP_001285584.1 | type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA | - |
| ADZ28_RS10320 (ADZ28_10330) | cbtA | 2058761..2059135 (+) | 375 | WP_000854814.1 | type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA | - |
| ADZ28_RS10325 (ADZ28_10335) | yeeW | 2059132..2059326 (+) | 195 | WP_000988600.1 | DUF5983 family protein | - |
| ADZ28_RS25395 (ADZ28_10340) | - | 2059372..2059452 (+) | 81 | Protein_2006 | hypothetical protein | - |
| ADZ28_RS23740 | - | 2059741..2059869 (-) | 129 | Protein_2007 | transposase domain-containing protein | - |
| ADZ28_RS10335 (ADZ28_10345) | - | 2059941..2060123 (+) | 183 | WP_001016348.1 | EutP/PduV family microcompartment system protein | - |
| ADZ28_RS10340 (ADZ28_10350) | tmaR | 2060224..2060553 (-) | 330 | WP_000450409.1 | DUF496 family protein | - |
| ADZ28_RS10345 (ADZ28_10355) | yeeA | 2060725..2061783 (-) | 1059 | WP_001200891.1 | FUSC family protein | - |
| ADZ28_RS10350 (ADZ28_10360) | sbmC | 2061981..2062454 (-) | 474 | WP_001105415.1 | DNA gyrase inhibitor SbmC | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16556.98 Da Isoelectric Point: 7.6151
>NTDB_id=131644 ADZ28_RS24895 WP_000187523.1 2057500..2057946(+) (radC) [Escherichia coli strain DH1Ec169]
MTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPRE
VIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
MTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPRE
VIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
Nucleotide
Download Length: 447 bp
>NTDB_id=131644 ADZ28_RS24895 WP_000187523.1 2057500..2057946(+) (radC) [Escherichia coli strain DH1Ec169]
ATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTT
CACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATC
TGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACCATCAACCGCACGGAAGTCCATCCCCGGGAA
GTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACACAATCACCCGTCCGGTGAAGTCACACCCAG
TAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGGTGGATATCCGGGTGCCGGACCATCTGATAG
TCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
ATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTT
CACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATC
TGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACCATCAACCGCACGGAAGTCCATCCCCGGGAA
GTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACACAATCACCCGTCCGGTGAAGTCACACCCAG
TAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGGTGGATATCCGGGTGCCGGACCATCTGATAG
TCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
54.867 |
76.351 |
0.419 |