Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | ADZ27_RS24900 | Genome accession | NZ_CP012126 |
| Coordinates | 2060114..2060560 (+) | Length | 148 a.a. |
| NCBI ID | WP_000187523.1 | Uniprot ID | P76362 |
| Organism | Escherichia coli strain DH1Ec104 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2055114..2065560
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ADZ27_RS10295 (ADZ27_10305) | agn43 | 2055345..2058464 (+) | 3120 | WP_000820410.1 | autotransporter adhesin Ag43 | - |
| ADZ27_RS10300 (ADZ27_10310) | yeeR | 2058585..2060117 (+) | 1533 | WP_001350525.1 | protein YeeR | - |
| ADZ27_RS24900 (ADZ27_10315) | radC | 2060114..2060560 (+) | 447 | WP_000187523.1 | RadC family protein | Machinery gene |
| ADZ27_RS10310 (ADZ27_10320) | yeeT | 2060623..2060844 (+) | 222 | WP_000692323.1 | DUF987 domain-containing protein | - |
| ADZ27_RS10315 (ADZ27_10325) | cbeA | 2060918..2061286 (+) | 369 | WP_001285584.1 | type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA | - |
| ADZ27_RS10320 (ADZ27_10330) | cbtA | 2061375..2061749 (+) | 375 | WP_000854814.1 | type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA | - |
| ADZ27_RS10325 (ADZ27_10335) | yeeW | 2061746..2061940 (+) | 195 | WP_000988600.1 | DUF5983 family protein | - |
| ADZ27_RS25390 (ADZ27_10340) | - | 2061986..2062066 (+) | 81 | Protein_2008 | hypothetical protein | - |
| ADZ27_RS23725 | - | 2062355..2062483 (-) | 129 | Protein_2009 | transposase domain-containing protein | - |
| ADZ27_RS10335 (ADZ27_10345) | - | 2062555..2062737 (+) | 183 | WP_001016348.1 | EutP/PduV family microcompartment system protein | - |
| ADZ27_RS10340 (ADZ27_10350) | tmaR | 2062838..2063167 (-) | 330 | WP_000450409.1 | DUF496 family protein | - |
| ADZ27_RS10345 (ADZ27_10355) | yeeA | 2063339..2064397 (-) | 1059 | WP_001200891.1 | FUSC family protein | - |
| ADZ27_RS10350 (ADZ27_10360) | sbmC | 2064595..2065068 (-) | 474 | WP_001105415.1 | DNA gyrase inhibitor SbmC | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16556.98 Da Isoelectric Point: 7.6151
>NTDB_id=131564 ADZ27_RS24900 WP_000187523.1 2060114..2060560(+) (radC) [Escherichia coli strain DH1Ec104]
MTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPRE
VIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
MTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPRE
VIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
Nucleotide
Download Length: 447 bp
>NTDB_id=131564 ADZ27_RS24900 WP_000187523.1 2060114..2060560(+) (radC) [Escherichia coli strain DH1Ec104]
ATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTT
CACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATC
TGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACCATCAACCGCACGGAAGTCCATCCCCGGGAA
GTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACACAATCACCCGTCCGGTGAAGTCACACCCAG
TAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGGTGGATATCCGGGTGCCGGACCATCTGATAG
TCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
ATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTT
CACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATC
TGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACCATCAACCGCACGGAAGTCCATCCCCGGGAA
GTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACACAATCACCCGTCCGGTGAAGTCACACCCAG
TAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGGTGGATATCCGGGTGCCGGACCATCTGATAG
TCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
54.867 |
76.351 |
0.419 |