Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BF29_RS16405 Genome accession   NZ_CP009709
Coordinates   3271236..3273050 (+) Length   604 a.a.
NCBI ID   WP_029141806.1    Uniprot ID   A0A8B4BS23
Organism   Heyndrickxia coagulans DSM     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3266236..3278050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BF29_RS16380 (BF29_3365) - 3267028..3267969 (+) 942 WP_029141810.1 ABC transporter ATP-binding protein -
  BF29_RS16385 (BF29_3366) spxA 3268248..3268643 (+) 396 WP_013858789.1 transcriptional regulator SpxA -
  BF29_RS16395 (BF29_3367) mecA 3269007..3269666 (+) 660 WP_029141808.1 adaptor protein MecA -
  BF29_RS16400 (BF29_3368) - 3269942..3271168 (+) 1227 WP_236579055.1 competence protein CoiA -
  BF29_RS16405 (BF29_3369) pepF 3271236..3273050 (+) 1815 WP_029141806.1 oligoendopeptidase F Regulator
  BF29_RS16410 (BF29_3370) - 3273442..3273633 (-) 192 WP_017553961.1 hypothetical protein -
  BF29_RS16415 (BF29_3371) - 3273924..3274781 (-) 858 WP_029141805.1 ClpXP adapter SpxH family protein -
  BF29_RS16420 (BF29_3372) - 3274778..3275179 (-) 402 WP_029141804.1 globin -
  BF29_RS16425 (BF29_3373) - 3275616..3276395 (-) 780 WP_029141803.1 lytic transglycosylase domain-containing protein -
  BF29_RS16430 (BF29_3374) - 3276392..3276976 (-) 585 WP_029141802.1 CYTH domain-containing protein -
  BF29_RS16435 (BF29_3375) - 3277113..3277496 (+) 384 WP_029141801.1 hypothetical protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69273.92 Da        Isoelectric Point: 5.0676

>NTDB_id=131511 BF29_RS16405 WP_029141806.1 3271236..3273050(+) (pepF) [Heyndrickxia coagulans DSM]
MENGKKVHALPSRNEVPDELTWRLEDIFPSDDDWNKEYEAVKEKLSGAASYQGKLGESAEQLYHALKFQDEVTERFGKLY
TYAHMRYDQDTTNAFYQGMDSKAKSLAAQVGSAFAFVVPEILSIEEAKLNQFLEAYVPLQLYRHALEEINEMRPHILSKE
EEALLAQVSEVLNTSSTTFGMLNNADLEFPTVIDENGNEVQITHGRFTRLLESKDRRVRKEAFQKLYATYKKFTNTFAST
LSGQVKKNNVVAQIRHYHSAREAALAANHIPEKVYDQLVETVNRNLGLLQRYVALRKKVLQLDEVHMYDLYTPLVQDADM
EVTYEKAKEIVLDGLHPLGGEYQGILQQAFENRWIDVVENKGKRSGAYSSGAYGTNPYILLNWQDNIDNVFTLAHELGHS
VHSYYTRKNQPYPYGDYSIFVAEVASTCNEALLNDYLLKTIKDEKQRIYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
HGEALTAELLTDEYYKLNQKYFGTDIAIDQEIGLEWARIPHFYYDYYVYQYATGFSAATALSKQILEEGEPAVKRYIGYL
SAGSSEYPIEVLKKAGVDMASPQPVEDALKVFEEKLTEMENLLG

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=131511 BF29_RS16405 WP_029141806.1 3271236..3273050(+) (pepF) [Heyndrickxia coagulans DSM]
ATGGAAAACGGGAAAAAAGTACACGCGTTGCCAAGCCGGAACGAGGTCCCTGACGAATTAACTTGGAGGCTTGAGGATAT
TTTTCCGAGTGACGATGACTGGAATAAAGAATATGAAGCAGTAAAAGAAAAGCTGTCCGGTGCCGCTTCTTATCAGGGGA
AACTTGGCGAAAGCGCGGAACAGCTTTATCATGCGCTAAAGTTCCAGGATGAAGTGACGGAAAGGTTCGGCAAGCTGTAT
ACATACGCGCATATGCGTTATGACCAGGACACAACGAATGCCTTTTACCAGGGGATGGACAGCAAAGCGAAAAGCCTTGC
CGCCCAGGTTGGGAGCGCGTTTGCGTTTGTGGTGCCGGAAATTCTGTCGATTGAGGAAGCGAAACTGAACCAATTCCTGG
AAGCTTATGTGCCGCTTCAGCTGTACCGGCATGCATTGGAAGAAATTAATGAAATGCGCCCGCATATTTTATCTAAGGAA
GAAGAAGCATTGCTCGCACAGGTTTCGGAAGTGCTGAATACTTCCAGCACCACTTTCGGCATGCTCAACAATGCAGACCT
TGAGTTCCCGACAGTAATCGATGAAAACGGCAATGAAGTGCAGATCACGCACGGCCGCTTTACACGCCTGCTGGAAAGCA
AAGACCGCCGCGTGCGCAAAGAGGCATTCCAAAAATTGTACGCGACCTACAAAAAATTCACCAACACGTTTGCGAGCACG
CTCAGCGGCCAGGTGAAAAAGAACAATGTTGTAGCGCAAATCCGCCATTACCATTCGGCGCGTGAAGCTGCCCTTGCGGC
AAACCACATTCCGGAAAAAGTGTACGACCAGCTCGTGGAGACGGTGAACCGAAATCTCGGTTTGCTGCAGCGGTATGTTG
CTTTGCGCAAAAAAGTGCTGCAGCTTGATGAAGTGCATATGTACGATCTGTATACGCCGCTTGTCCAGGACGCCGATATG
GAAGTGACATATGAAAAGGCGAAAGAGATCGTGCTTGACGGACTCCATCCGCTCGGCGGGGAATACCAGGGCATTTTACA
GCAGGCGTTTGAAAACCGCTGGATTGACGTGGTGGAAAACAAAGGCAAGCGGAGCGGGGCCTATTCTTCGGGCGCTTACG
GGACCAATCCGTACATTTTGCTGAACTGGCAGGACAATATTGACAATGTGTTCACCCTCGCGCATGAGCTCGGCCACAGC
GTCCACAGCTATTACACGCGGAAGAACCAGCCGTATCCGTACGGGGATTATTCCATTTTTGTGGCGGAAGTGGCTTCCAC
GTGCAATGAGGCGCTGTTGAACGATTATTTGTTAAAAACGATCAAAGACGAGAAACAGCGGATTTACTTATTGAATCATT
ATCTGGAAGGTTTCCGCGGGACGGTCTTCCGCCAGACGATGTTTGCCGAATTTGAGCATCTGATCCATCAAAAAGCGCAA
CATGGCGAAGCGCTGACAGCGGAACTTTTGACAGATGAGTATTATAAGCTGAACCAAAAATACTTTGGCACGGATATCGC
CATCGATCAGGAAATCGGGCTTGAGTGGGCACGCATTCCGCATTTTTATTACGATTATTATGTATATCAGTATGCGACCG
GCTTCAGCGCCGCGACCGCGTTAAGCAAACAAATCCTCGAAGAAGGGGAACCGGCTGTCAAACGCTACATCGGCTATTTA
AGCGCCGGCAGCTCGGAATATCCGATTGAAGTATTGAAAAAAGCAGGCGTCGATATGGCGTCGCCCCAGCCGGTCGAAGA
TGCGTTAAAAGTATTTGAAGAAAAATTAACGGAAATGGAAAACTTGCTCGGATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(210-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B4BS23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.338

98.013

0.493

Multiple sequence alignment