Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BG05_RS24740 Genome accession   NZ_CP009692
Coordinates   4475666..4475989 (+) Length   107 a.a.
NCBI ID   WP_002030429.1    Uniprot ID   A0A084J505
Organism   Bacillus mycoides strain ATCC 6462     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4470666..4480989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG05_RS24725 (BG05_4619) - 4471184..4472551 (-) 1368 WP_016126727.1 aldehyde dehydrogenase -
  BG05_RS24730 (BG05_4620) inhA1 4472722..4475109 (-) 2388 WP_002126109.1 M6 family metalloprotease immune inhibitor InhA1 -
  BG05_RS24735 (BG05_4621) - 4475452..4475586 (+) 135 WP_002011474.1 anti-repressor SinI family protein -
  BG05_RS24740 (BG05_4622) sinR 4475666..4475989 (+) 324 WP_002030429.1 helix-turn-helix domain-containing protein Regulator
  BG05_RS24745 (BG05_4623) calY 4476072..4476665 (-) 594 WP_002126106.1 biofilm matrix protein CalY -
  BG05_RS24750 (BG05_4624) - 4477109..4477978 (-) 870 WP_033733844.1 DUF4047 domain-containing protein -
  BG05_RS24755 (BG05_4625) - 4478140..4478727 (-) 588 WP_000172837.1 CalY family protein -
  BG05_RS24760 (BG05_4626) sipW 4478790..4479359 (-) 570 WP_002064334.1 signal peptidase I SipW -
  BG05_RS24765 (BG05_4627) - 4479556..4480842 (-) 1287 WP_002126097.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12274.04 Da        Isoelectric Point: 7.2050

>NTDB_id=131293 BG05_RS24740 WP_002030429.1 4475666..4475989(+) (sinR) [Bacillus mycoides strain ATCC 6462]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTTEGHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQQ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=131293 BG05_RS24740 WP_002030429.1 4475666..4475989(+) (sinR) [Bacillus mycoides strain ATCC 6462]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGCATTTCATTAACAGAACTCGCCGAAAAAGCTGGTGTCGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCTATTCAGTTTCTTGAAAAAATTGCAGCTGTTC
TACAAATTCCAGTTGATACTTTACTTCACGATGAAACAACAACGGAGGGTCACCTAGACTCCGAATGGACACAGCTCGTT
AAAGATGCGATGAGCTCTGGTGTCTCAAAAGAACAGTTTCGTGAATTTCTCGAATTTACACAATGGAAGAAAAATCAACA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A084J505

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment