Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BG05_RS21550 Genome accession   NZ_CP009692
Coordinates   3850668..3850955 (-) Length   95 a.a.
NCBI ID   WP_002012401.1    Uniprot ID   A0A366G1Y4
Organism   Bacillus mycoides strain ATCC 6462     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3845668..3855955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG05_RS21510 (BG05_3980) - 3846332..3846858 (-) 527 Protein_3904 DinB family protein -
  BG05_RS21515 (BG05_3981) - 3847055..3847402 (+) 348 WP_000426320.1 DUF4257 domain-containing protein -
  BG05_RS21520 (BG05_3982) - 3847487..3847711 (+) 225 WP_002012407.1 hypothetical protein -
  BG05_RS21525 (BG05_3983) - 3847742..3847945 (-) 204 WP_002012406.1 hypothetical protein -
  BG05_RS21530 (BG05_3984) - 3847995..3848930 (-) 936 WP_003188755.1 aldo/keto reductase -
  BG05_RS21535 (BG05_3985) - 3849038..3849346 (+) 309 WP_002012403.1 ArsR/SmtB family transcription factor -
  BG05_RS21540 (BG05_3986) - 3849387..3850337 (-) 951 WP_002012402.1 serine protease -
  BG05_RS21550 (BG05_3987) abrB 3850668..3850955 (-) 288 WP_002012401.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BG05_RS21555 (BG05_3988) - 3851075..3852955 (-) 1881 WP_002012400.1 FtsX-like permease family protein -
  BG05_RS21560 (BG05_3989) nadE 3853226..3854044 (+) 819 WP_002012398.1 ammonia-dependent NAD(+) synthetase -
  BG05_RS21565 (BG05_3990) - 3854089..3854550 (-) 462 WP_002130989.1 NUDIX hydrolase -
  BG05_RS30050 - 3854640..3854765 (-) 126 WP_367946518.1 DUF4083 family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10647.42 Da        Isoelectric Point: 6.9795

>NTDB_id=131290 BG05_RS21550 WP_002012401.1 3850668..3850955(-) (abrB) [Bacillus mycoides strain ATCC 6462]
MKATGIIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDQNISLANGNITVSIEGAK
HVIKEIEQFLNKSKI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=131290 BG05_RS21550 WP_002012401.1 3850668..3850955(-) (abrB) [Bacillus mycoides strain ATCC 6462]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGATGAATTGGGACGTATAGTTATTCCTAAAGAATTACGGGATGTATTAGG
AATACAAATCAAATCACCACTTGAAATTTTTGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCATACAATGCTT
GTCAAATAACAGGTGATGTTTCAGATCAAAATATTTCATTAGCAAATGGAAACATTACTGTTAGTATAGAAGGCGCAAAA
CATGTAATAAAAGAAATTGAGCAGTTTTTGAACAAGAGTAAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366G1Y4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.383

98.947

0.558

Multiple sequence alignment